Harnessing RIBOnucleic acid - Small molecules Structures
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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST
SM: 3HE
Hypomethylated yeast 80S bound with cycloheximide, unmodified U2921, mid rotated
Structure of Mango III variant aptamer bound to T01-07M-B
SM: W6F
Crystal structure of SARS-CoV-2 nsp16/nsp10 in complex with Cap-1 RNA
SM: SAH SAH
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
SM: T1C T1C T1C T1C T1C T1C T1C
Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
SM: T1C T1C T1C T1C T1C T1C T1C T1C
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
SM: T1C T1C T1C T1C T1C
E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
SM: FUA
E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 3) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid
Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
SM: T1C T1C T1C T1C T1C T1C
High-resolution C. elegans 80S ribosome structure - class 1
Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2
SM: AMP
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Replication-like initiation state of influenza polymerase with GTP and CTP at respectively the -1 and +1 positions (strain A/little yellow-shouldered bat/Guatemala/060/2010/H17N10)
SM: CTP GTP
High-resolution cryo-EM structure of Saccharolobus solfataricus 30S ribosomal subunit bound to mRNA and initiator tRNA
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1
SM: 3HE ANM GDP HYG
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position
SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA
SM: GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET SPK
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
SM: GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET SPK YMZ
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)
Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)
SM: FUA GDP
Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
SM: EPE TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER
Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine
Crystal structure of the Class V GTP aptamer in complex with GTP
SM: GTP GTP GTP GTP
Crystal structure of the Class V (G61A) GTP aptamer variant in complex with GTP
Crystal structure containing UGGAA/UGGAA motif interacting with NCD molecule
SM: B2R B2R B2R
RNA duplex containing UGGAA/UGGAA motif interacting with NCD molecule
SM: B2R B2R
Crystal structure of RhoBAST aptamer in complex with TMR
SM: A1EI4
Structural insights into the polymerase catalyzed FAD-capping of hepatitis C viral RNA
SM: CDP FAD
SM: FAD GDP
SM: C5P FAD
In situ human P-Z state 80S ribosome
SM: SPM SPM SPM SPM SPM SPM SPM
In situ human P-E state 80S ribosome
In situ human eEF2-A/P-P/E state 80S ribosome
In situ human eEF1A-A/T-P state 80S ribosome
In situ human Hibernating rotate 3 with E-site tRNA state 80S ribosome
In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome
In situ human hibernating class2 80S ribosome
In situ human Hibernating class3 80S ribosome
In situ human Hibernating class4 80S ribosome
In situ human Hibernating class5 80S ribosome
In situ HHT and CHX treated A-P state 80S ribosome
SM: HMT SPM SPM SPM SPM SPM SPM SPM
In situ HHT and CHX treated A-P-Z state 80S ribosome
In situ HHT and CHX treated human eEF1A-A/T-P state 80S ribosome
SM: 3HE HMT SPM SPM SPM SPM SPM SPM SPM
In situ HHT and CHX treated human eEF1A-A/T-P-Z state 80S ribosome
In situ HHT and CHX treated human P state 80S ribosome
In situ human post eEF1A-A/T-P-E state 80S ribosome
In situ human Post-eEF1A-AT-P state 80S ribosome
In situ human Post-eEF1A-A/T-P-Z state 80S ribosome
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8
