HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9if0

System information

Experimental technique X-ray
Experimental resolution 2.55
System mass 10.70 kDa
Deposition year 2025
Molecule type RNA
# RNA entities 1
Organism Homo
RCSB PDB Entry 9if0
Reference Mateja-Pluta Martyna, Błaszczyk Leszek, Bejger Magdalena, Nakatani Kazuhiko, Kiliszek Agnieszka. . Naphthyridine carbamate dimer ligand induces formation of Z-RNA-like fold of disease-related RNA and exhibits a molecular glue characteristics in crystal lattice formation Nucleic Acids Research
Equivalence Class NR_all_88749.1
BGSU version: 4.48

Compound B2R
Residue . / 101
Chain C / AAA
Non-redundant False
Interacting RNA chains B/BBB, A/AAA
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/AAA: unknown, B/BBB: unknown
RNA family global unknown
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound B2R
Residue . / 101
Chain D / BBB
Non-redundant False
Interacting RNA chains B/BBB, A/AAA
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/AAA: unknown, B/BBB: unknown
RNA family global unknown
Volume 139.26 Å3
Hydrophobicity 0.392
Hydrophilicity 0.920
Buriedness 0.494
Don/acc character 1.218
SiteScore 0.758
D Score 0.772
Kd