Complex 9fhl
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.50 |
| System mass | 1008.01 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fhl |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1557 |
| Chain | NC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 772.09 Å3 |
| Hydrophobicity | 0.357 |
| Hydrophilicity | 1.316 |
| Buriedness | 0.866 |
| Don/acc character | 1.192 |
| SiteScore | 1.113 |
| D Score | 1.031 |
| Compound | SPM |
| Residue | . / 1558 |
| Chain | OC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 268.23 Å3 |
| Hydrophobicity | 0.260 |
| Hydrophilicity | 1.326 |
| Buriedness | 0.832 |
| Don/acc character | 2.684 |
| SiteScore | 0.832 |
| D Score | 0.537 |
| Compound | SPM |
| Residue | . / 1559 |
| Chain | PC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 743.28 Å3 |
| Hydrophobicity | 0.233 |
| Hydrophilicity | 1.208 |
| Buriedness | 0.762 |
| Don/acc character | 1.260 |
| SiteScore | 1.193 |
| D Score | 1.004 |
| Compound | SPM |
| Residue | . / 1560 |
| Chain | QC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 361.52 Å3 |
| Hydrophobicity | 0.173 |
| Hydrophilicity | 1.426 |
| Buriedness | 0.872 |
| Don/acc character | 1.215 |
| SiteScore | 0.922 |
| D Score | 0.749 |
| Compound | SPM |
| Residue | . / 1561 |
| Chain | RC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 234.61 Å3 |
| Hydrophobicity | 0.137 |
| Hydrophilicity | 1.232 |
| Buriedness | 0.865 |
| Don/acc character | 2.486 |
| SiteScore | 0.759 |
| D Score | 0.673 |
| Compound | SPM |
| Residue | . / 1562 |
| Chain | SC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 734.36 Å3 |
| Hydrophobicity | 0.445 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.828 |
| Don/acc character | 1.430 |
| SiteScore | 1.087 |
| D Score | 1.041 |
| Compound | SPM |
| Residue | . / 1563 |
| Chain | TC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 806.05 Å3 |
| Hydrophobicity | 0.177 |
| Hydrophilicity | 1.420 |
| Buriedness | 0.876 |
| Don/acc character | 1.431 |
| SiteScore | 1.119 |
| D Score | 1.003 |
| Compound | SPM |
| Residue | . / 1564 |
| Chain | UC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 391.36 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 1.061 |
| Buriedness | 0.816 |
| Don/acc character | 1.678 |
| SiteScore | 1.025 |
| D Score | 0.822 |
| Compound | SPM |
| Residue | . / 1565 |
| Chain | VC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 806.74 Å3 |
| Hydrophobicity | 0.241 |
| Hydrophilicity | 1.299 |
| Buriedness | 0.837 |
| Don/acc character | 1.761 |
| SiteScore | 1.243 |
| D Score | 1.019 |
| Compound | SPM |
| Residue | . / 1566 |
| Chain | WC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 585.16 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 0.902 |
| Buriedness | 0.741 |
| Don/acc character | 1.682 |
| SiteScore | 0.914 |
| D Score | 0.909 |
| Compound | SPM |
| Residue | . / 1567 |
| Chain | XC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 698.01 Å3 |
| Hydrophobicity | 0.034 |
| Hydrophilicity | 1.196 |
| Buriedness | 0.762 |
| Don/acc character | 2.038 |
| SiteScore | 1.193 |
| D Score | 1.007 |
| Compound | SPM |
| Residue | . / 1568 |
| Chain | YC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 773.12 Å3 |
| Hydrophobicity | 0.127 |
| Hydrophilicity | 1.325 |
| Buriedness | 0.835 |
| Don/acc character | 1.529 |
| SiteScore | 1.242 |
| D Score | 1.009 |
| Compound | SPM |
| Residue | . / 1569 |
| Chain | ZC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 302.53 Å3 |
| Hydrophobicity | 0.123 |
| Hydrophilicity | 1.056 |
| Buriedness | 0.651 |
| Don/acc character | 1.584 |
| SiteScore | 0.899 |
| D Score | 0.898 |
| Compound | SPM |
| Residue | . / 1570 |
| Chain | AD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 728.19 Å3 |
| Hydrophobicity | 0.027 |
| Hydrophilicity | 1.472 |
| Buriedness | 0.781 |
| Don/acc character | 1.568 |
| SiteScore | 1.206 |
| D Score | 0.929 |
| Compound | SPM |
| Residue | . / 1571 |
| Chain | BD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 554.29 Å3 |
| Hydrophobicity | 0.148 |
| Hydrophilicity | 1.293 |
| Buriedness | 0.833 |
| Don/acc character | 1.667 |
| SiteScore | 1.240 |
| D Score | 1.018 |
| Compound | SPM |
| Residue | . / 1572 |
| Chain | CD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 768.32 Å3 |
| Hydrophobicity | 0.251 |
| Hydrophilicity | 1.306 |
| Buriedness | 0.866 |
| Don/acc character | 1.344 |
| SiteScore | 1.112 |
| D Score | 1.034 |
| Compound | SPM |
| Residue | . / 1573 |
| Chain | DD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 195.17 Å3 |
| Hydrophobicity | 0.063 |
| Hydrophilicity | 1.106 |
| Buriedness | 0.640 |
| Don/acc character | 3.498 |
| SiteScore | 0.907 |
| D Score | 0.701 |
| Compound | SPM |
| Residue | . / 1574 |
| Chain | ED / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 687.37 Å3 |
| Hydrophobicity | 0.072 |
| Hydrophilicity | 1.377 |
| Buriedness | 0.746 |
| Don/acc character | 1.764 |
| SiteScore | 1.182 |
| D Score | 0.939 |
| Compound | SPM |
| Residue | . / 1575 |
| Chain | FD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 665.08 Å3 |
| Hydrophobicity | 0.220 |
| Hydrophilicity | 0.986 |
| Buriedness | 0.740 |
| Don/acc character | 1.085 |
| SiteScore | 1.039 |
| D Score | 1.063 |
| Compound | SPM |
| Residue | . / 1576 |
| Chain | GD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 273.37 Å3 |
| Hydrophobicity | 0.421 |
| Hydrophilicity | 1.302 |
| Buriedness | 0.846 |
| Don/acc character | 2.829 |
| SiteScore | 0.890 |
| D Score | 0.755 |
| Compound | SPM |
| Residue | . / 1577 |
| Chain | HD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 289.15 Å3 |
| Hydrophobicity | 0.030 |
| Hydrophilicity | 1.206 |
| Buriedness | 0.736 |
| Don/acc character | 1.823 |
| SiteScore | 1.153 |
| D Score | 0.960 |
| Compound | SPM |
| Residue | . / 1578 |
| Chain | ID / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 409.54 Å3 |
| Hydrophobicity | 0.113 |
| Hydrophilicity | 1.139 |
| Buriedness | 0.689 |
| Don/acc character | 3.321 |
| SiteScore | 0.994 |
| D Score | 0.982 |
| Compound | SPM |
| Residue | . / 1579 |
| Chain | JD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 440.41 Å3 |
| Hydrophobicity | 0.236 |
| Hydrophilicity | 1.197 |
| Buriedness | 0.804 |
| Don/acc character | 2.355 |
| SiteScore | 1.221 |
| D Score | 1.032 |
| Compound | SPM |
| Residue | . / 1580 |
| Chain | KD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 427.38 Å3 |
| Hydrophobicity | 0.329 |
| Hydrophilicity | 1.002 |
| Buriedness | 0.697 |
| Don/acc character | 1.568 |
| SiteScore | 1.067 |
| D Score | 0.916 |
| Compound | SPM |
| Residue | . / 1581 |
| Chain | LD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 631.12 Å3 |
| Hydrophobicity | 0.135 |
| Hydrophilicity | 1.334 |
| Buriedness | 0.845 |
| Don/acc character | 1.169 |
| SiteScore | 1.248 |
| D Score | 1.012 |
| Compound | SPM |
| Residue | . / 1582 |
| Chain | MD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 540.23 Å3 |
| Hydrophobicity | 0.150 |
| Hydrophilicity | 1.418 |
| Buriedness | 0.835 |
| Don/acc character | 1.091 |
| SiteScore | 1.118 |
| D Score | 0.820 |
| Compound | SPM |
| Residue | . / 1583 |
| Chain | ND / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 189.34 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 1.337 |
| Buriedness | 0.712 |
| Don/acc character | 1.879 |
| SiteScore | 0.860 |
| D Score | 0.548 |
| Compound | SPM |
| Residue | . / 1584 |
| Chain | OD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 259.99 Å3 |
| Hydrophobicity | 0.576 |
| Hydrophilicity | 1.157 |
| Buriedness | 0.901 |
| Don/acc character | 2.512 |
| SiteScore | 0.951 |
| D Score | 0.867 |
| Compound | SPM |
| Residue | . / 1585 |
| Chain | PD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 352.95 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 1.492 |
| Buriedness | 0.811 |
| Don/acc character | 1.163 |
| SiteScore | 1.076 |
| D Score | 0.940 |
| Compound | SPM |
| Residue | . / 1586 |
| Chain | QD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 142.69 Å3 |
| Hydrophobicity | 0.358 |
| Hydrophilicity | 1.365 |
| Buriedness | 0.791 |
| Don/acc character | 1.262 |
| SiteScore | 0.815 |
| D Score | 0.460 |
| Compound | SPM |
| Residue | . / 1587 |
| Chain | RD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 252.79 Å3 |
| Hydrophobicity | 0.499 |
| Hydrophilicity | 1.128 |
| Buriedness | 0.848 |
| Don/acc character | 2.196 |
| SiteScore | 0.711 |
| D Score | 0.582 |
| Compound | SPM |
| Residue | . / 1589 |
| Chain | TD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 233.58 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 0.913 |
| Buriedness | 0.619 |
| Don/acc character | 3.600 |
| SiteScore | 0.980 |
| D Score | 0.831 |
| Compound | SPM |
| Residue | . / 1590 |
| Chain | UD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 90.55 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 0.993 |
| Buriedness | 0.647 |
| Don/acc character | 2.639 |
| SiteScore | 0.657 |
| D Score | 0.404 |
| Compound | SPM |
| Residue | . / 1591 |
| Chain | VD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 200.31 Å3 |
| Hydrophobicity | 0.155 |
| Hydrophilicity | 1.258 |
| Buriedness | 0.699 |
| Don/acc character | 1.438 |
| SiteScore | 1.013 |
| D Score | 0.773 |
| Compound | SPM |
| Residue | . / 1592 |
| Chain | WD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 716.18 Å3 |
| Hydrophobicity | 0.081 |
| Hydrophilicity | 1.170 |
| Buriedness | 0.709 |
| Don/acc character | 1.595 |
| SiteScore | 1.157 |
| D Score | 0.984 |
| Compound | SPM |
| Residue | . / 1593 |
| Chain | XD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 450.36 Å3 |
| Hydrophobicity | 0.502 |
| Hydrophilicity | 1.328 |
| Buriedness | 0.868 |
| Don/acc character | 1.023 |
| SiteScore | 1.113 |
| D Score | 1.028 |
| Compound | SPM |
| Residue | . / 1594 |
| Chain | YD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 244.90 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.287 |
| Buriedness | 0.668 |
| Don/acc character | 2.318 |
| SiteScore | 0.830 |
| D Score | 0.537 |
| Compound | SPM |
| Residue | . / 1595 |
| Chain | ZD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 346.77 Å3 |
| Hydrophobicity | 0.310 |
| Hydrophilicity | 1.255 |
| Buriedness | 0.852 |
| Don/acc character | 1.188 |
| SiteScore | 0.983 |
| D Score | 0.697 |
| Compound | SPM |
| Residue | . / 1596 |
| Chain | AE / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 398.57 Å3 |
| Hydrophobicity | 0.098 |
| Hydrophilicity | 1.150 |
| Buriedness | 0.726 |
| Don/acc character | 2.887 |
| SiteScore | 1.169 |
| D Score | 1.001 |
| Compound | SPM |
| Residue | . / 1597 |
| Chain | BE / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 639.01 Å3 |
| Hydrophobicity | 0.248 |
| Hydrophilicity | 1.062 |
| Buriedness | 0.824 |
| Don/acc character | 3.348 |
| SiteScore | 1.223 |
| D Score | 1.074 |
| Compound | SPM |
| Residue | . / 1598 |
| Chain | CE / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 419.15 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.738 |
| Buriedness | 0.890 |
| Don/acc character | 0.942 |
| SiteScore | 0.876 |
| D Score | 0.584 |
| Compound | SPM |
| Residue | . / 1599 |
| Chain | DE / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 120.74 Å3 |
| Hydrophobicity | 0.777 |
| Hydrophilicity | 1.124 |
| Buriedness | 0.777 |
| Don/acc character | 2.574 |
| SiteScore | 0.950 |
| D Score | 0.716 |
| Compound | SPM |
| Residue | . / 303 |
| Chain | IE / F |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 337.51 Å3 |
| Hydrophobicity | 0.338 |
| Hydrophilicity | 1.343 |
| Buriedness | 0.820 |
| Don/acc character | 0.911 |
| SiteScore | 1.082 |
| D Score | 0.995 |