Complex 9fs8
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.70 |
| System mass | 1014.90 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fs8 |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Equivalence Class |
NR_all_87365.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 1556 |
| Chain | MC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 755.97 Å3 |
| Hydrophobicity | 0.196 |
| Hydrophilicity | 1.369 |
| Buriedness | 0.887 |
| Don/acc character | 1.596 |
| SiteScore | 1.277 |
| D Score | 1.026 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1557 |
| Chain | NC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 400.62 Å3 |
| Hydrophobicity | 0.075 |
| Hydrophilicity | 1.522 |
| Buriedness | 0.823 |
| Don/acc character | 2.298 |
| SiteScore | 0.925 |
| D Score | 0.844 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1558 |
| Chain | OC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 243.19 Å3 |
| Hydrophobicity | 0.412 |
| Hydrophilicity | 1.094 |
| Buriedness | 0.785 |
| Don/acc character | 3.631 |
| SiteScore | 0.903 |
| D Score | 0.662 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1559 |
| Chain | PC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 411.60 Å3 |
| Hydrophobicity | 0.139 |
| Hydrophilicity | 1.537 |
| Buriedness | 0.843 |
| Don/acc character | 1.218 |
| SiteScore | 1.072 |
| D Score | 0.720 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1560 |
| Chain | QC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 567.32 Å3 |
| Hydrophobicity | 0.180 |
| Hydrophilicity | 1.203 |
| Buriedness | 0.837 |
| Don/acc character | 2.931 |
| SiteScore | 1.221 |
| D Score | 1.021 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1561 |
| Chain | RC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 796.79 Å3 |
| Hydrophobicity | 0.473 |
| Hydrophilicity | 1.145 |
| Buriedness | 0.808 |
| Don/acc character | 1.327 |
| SiteScore | 1.224 |
| D Score | 1.052 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1562 |
| Chain | SC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 592.70 Å3 |
| Hydrophobicity | 0.222 |
| Hydrophilicity | 1.416 |
| Buriedness | 0.853 |
| Don/acc character | 1.361 |
| SiteScore | 1.254 |
| D Score | 0.990 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1563 |
| Chain | TC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 256.56 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.362 |
| Buriedness | 0.795 |
| Don/acc character | 0.999 |
| SiteScore | 0.904 |
| D Score | 0.620 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1564 |
| Chain | UC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 740.19 Å3 |
| Hydrophobicity | 0.224 |
| Hydrophilicity | 1.271 |
| Buriedness | 0.852 |
| Don/acc character | 2.011 |
| SiteScore | 1.253 |
| D Score | 1.036 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1565 |
| Chain | VC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 253.13 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 0.983 |
| Buriedness | 0.737 |
| Don/acc character | 1.579 |
| SiteScore | 0.842 |
| D Score | 0.619 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1566 |
| Chain | WC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 633.18 Å3 |
| Hydrophobicity | 0.031 |
| Hydrophilicity | 1.107 |
| Buriedness | 0.751 |
| Don/acc character | 2.238 |
| SiteScore | 1.025 |
| D Score | 0.824 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1567 |
| Chain | XC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 576.58 Å3 |
| Hydrophobicity | 0.095 |
| Hydrophilicity | 1.468 |
| Buriedness | 0.829 |
| Don/acc character | 1.624 |
| SiteScore | 1.238 |
| D Score | 0.959 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1568 |
| Chain | YC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 607.11 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 1.302 |
| Buriedness | 0.840 |
| Don/acc character | 1.938 |
| SiteScore | 1.245 |
| D Score | 1.019 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1569 |
| Chain | ZC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 509.01 Å3 |
| Hydrophobicity | 0.278 |
| Hydrophilicity | 1.371 |
| Buriedness | 0.883 |
| Don/acc character | 1.532 |
| SiteScore | 1.034 |
| D Score | 0.908 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1570 |
| Chain | AD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 193.45 Å3 |
| Hydrophobicity | 0.063 |
| Hydrophilicity | 1.068 |
| Buriedness | 0.636 |
| Don/acc character | 2.739 |
| SiteScore | 0.934 |
| D Score | 0.749 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1571 |
| Chain | BD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 660.28 Å3 |
| Hydrophobicity | 0.032 |
| Hydrophilicity | 1.419 |
| Buriedness | 0.749 |
| Don/acc character | 1.567 |
| SiteScore | 1.184 |
| D Score | 0.927 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1572 |
| Chain | CD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 651.36 Å3 |
| Hydrophobicity | 0.265 |
| Hydrophilicity | 0.986 |
| Buriedness | 0.744 |
| Don/acc character | 1.000 |
| SiteScore | 1.041 |
| D Score | 1.065 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1573 |
| Chain | DD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 308.01 Å3 |
| Hydrophobicity | 0.087 |
| Hydrophilicity | 1.339 |
| Buriedness | 0.754 |
| Don/acc character | 1.246 |
| SiteScore | 1.187 |
| D Score | 0.956 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1574 |
| Chain | ED / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 462.36 Å3 |
| Hydrophobicity | 0.219 |
| Hydrophilicity | 0.994 |
| Buriedness | 0.697 |
| Don/acc character | 3.943 |
| SiteScore | 1.158 |
| D Score | 1.034 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1575 |
| Chain | FD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 435.27 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 1.251 |
| Buriedness | 0.805 |
| Don/acc character | 2.140 |
| SiteScore | 1.221 |
| D Score | 1.015 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1576 |
| Chain | GD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 222.95 Å3 |
| Hydrophobicity | 0.417 |
| Hydrophilicity | 0.787 |
| Buriedness | 0.627 |
| Don/acc character | 4.246 |
| SiteScore | 0.996 |
| D Score | 0.860 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1577 |
| Chain | HD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 550.52 Å3 |
| Hydrophobicity | 0.120 |
| Hydrophilicity | 1.324 |
| Buriedness | 0.834 |
| Don/acc character | 1.462 |
| SiteScore | 1.241 |
| D Score | 1.009 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1578 |
| Chain | ID / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 343.69 Å3 |
| Hydrophobicity | 0.104 |
| Hydrophilicity | 1.344 |
| Buriedness | 0.833 |
| Don/acc character | 1.395 |
| SiteScore | 0.861 |
| D Score | 0.594 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1579 |
| Chain | JD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 230.50 Å3 |
| Hydrophobicity | 0.020 |
| Hydrophilicity | 1.231 |
| Buriedness | 0.674 |
| Don/acc character | 2.024 |
| SiteScore | 0.870 |
| D Score | 0.605 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1580 |
| Chain | KD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 481.23 Å3 |
| Hydrophobicity | 0.168 |
| Hydrophilicity | 1.318 |
| Buriedness | 0.826 |
| Don/acc character | 1.663 |
| SiteScore | 1.078 |
| D Score | 0.996 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1581 |
| Chain | LD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 83.69 Å3 |
| Hydrophobicity | 0.017 |
| Hydrophilicity | 0.973 |
| Buriedness | 0.626 |
| Don/acc character | 1.894 |
| SiteScore | 0.675 |
| D Score | 0.434 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1582 |
| Chain | MD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 344.72 Å3 |
| Hydrophobicity | 0.065 |
| Hydrophilicity | 1.245 |
| Buriedness | 0.716 |
| Don/acc character | 1.568 |
| SiteScore | 1.064 |
| D Score | 0.838 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1583 |
| Chain | ND / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 324.48 Å3 |
| Hydrophobicity | 0.069 |
| Hydrophilicity | 1.073 |
| Buriedness | 0.664 |
| Don/acc character | 4.463 |
| SiteScore | 1.127 |
| D Score | 0.989 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1584 |
| Chain | OD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 753.91 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.575 |
| Buriedness | 0.894 |
| Don/acc character | 1.009 |
| SiteScore | 1.105 |
| D Score | 0.930 |
| Kd | — |
| Compound | SPM |
| Residue | . / 303 |
| Chain | TD / F |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 635.58 Å3 |
| Hydrophobicity | 0.152 |
| Hydrophilicity | 1.304 |
| Buriedness | 0.819 |
| Don/acc character | 1.180 |
| SiteScore | 1.231 |
| D Score | 1.006 |
| Kd | — |