Complex 9hrg
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.05 |
| System mass | 90.85 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9hrg |
| Reference | Stafflinger Helena, Neißner Konstantin, Bartsch Saskia, Pichler Alexander K, Bartosik Karolina, Dhamotharan Karthikeyan, Abele Rupert, Duchardt-Ferner Elke, Micura Ronald, Schindelin Hermann, Wöhnert Jens. . Crystal structure of the class V GTP-binding RNA aptamer bound to its ligand: GTP recognition by a topologically complex intermolecular G-quadruplex Nucleic Acids Research |
| Equivalence Class |
NR_all_44054.1
BGSU version: 4.49 |
| Compound | GTP |
| Residue | . / 103 |
| Chain | G / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 121.42 Å3 |
| Hydrophobicity | 0.248 |
| Hydrophilicity | 1.354 |
| Buriedness | 0.691 |
| Don/acc character | 0.629 |
| SiteScore | 0.800 |
| D Score | 0.471 |
| Kd | — |
| Compound | GTP |
| Residue | . / 103 |
| Chain | M / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 131.37 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.709 |
| Buriedness | 0.658 |
| Don/acc character | 0.500 |
| SiteScore | 0.882 |
| D Score | 0.468 |
| Kd | — |
| Compound | GTP |
| Residue | . / 103 |
| Chain | S / C |
| Non-redundant | False |
| Interacting RNA chains | C/C |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/C: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 72.72 Å3 |
| Hydrophobicity | 0.092 |
| Hydrophilicity | 1.474 |
| Buriedness | 0.664 |
| Don/acc character | 0.760 |
| SiteScore | 0.753 |
| D Score | 0.378 |
| Kd | — |
| Compound | GTP |
| Residue | . / 103 |
| Chain | Y / D |
| Non-redundant | False |
| Interacting RNA chains | D/D |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | D/D: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 46.99 Å3 |
| Hydrophobicity | 0.173 |
| Hydrophilicity | 1.152 |
| Buriedness | 0.629 |
| Don/acc character | 1.486 |
| SiteScore | 0.603 |
| D Score | 0.299 |
| Kd | — |