HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p79

System information

Experimental technique Electron Microscopy
Experimental resolution 3.10
System mass 3868.94 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p79
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5257
Chain II / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 371.47 Å3
Hydrophobicity 0.483
Hydrophilicity 1.054
Buriedness 0.704
Don/acc character 1.247
SiteScore 1.004
D Score 1.019

Compound SPM
Residue . / 5262
Chain NI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 136.51 Å3
Hydrophobicity 0.192
Hydrophilicity 1.054
Buriedness 0.573
Don/acc character 1.667
SiteScore 0.809
D Score 0.610

Compound SPM
Residue . / 5263
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5266
Chain RI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 920.27 Å3
Hydrophobicity 0.044
Hydrophilicity 1.950
Buriedness 0.836
Don/acc character 1.059
SiteScore 1.092
D Score 0.806

Compound SPM
Residue . / 5286
Chain LJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 344.72 Å3
Hydrophobicity 0.077
Hydrophilicity 2.055
Buriedness 0.828
Don/acc character 1.115
SiteScore 0.742
D Score 0.325

Compound SPM
Residue . / 5289
Chain OJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1389.49 Å3
Hydrophobicity 0.163
Hydrophilicity 1.522
Buriedness 0.827
Don/acc character 1.107
SiteScore 1.086
D Score 0.940

Compound SPM
Residue . / 5290
Chain PJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 757.69 Å3
Hydrophobicity 0.210
Hydrophilicity 1.173
Buriedness 0.773
Don/acc character 1.248
SiteScore 1.050
D Score 1.022