HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7n

System information

Experimental technique Electron Microscopy
Experimental resolution 2.83
System mass 3329.51 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7n
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain KI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 365.98 Å3
Hydrophobicity 0.383
Hydrophilicity 0.912
Buriedness 0.676
Don/acc character 1.809
SiteScore 1.160
D Score 1.049

Compound SPM
Residue . / 5264
Chain PI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 119.71 Å3
Hydrophobicity 0.146
Hydrophilicity 1.005
Buriedness 0.558
Don/acc character 1.774
SiteScore 0.799
D Score 0.609

Compound SPM
Residue . / 5265
Chain QI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5268
Chain TI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 764.55 Å3
Hydrophobicity 0.133
Hydrophilicity 2.021
Buriedness 0.850
Don/acc character 1.069
SiteScore 1.101
D Score 0.791

Compound SPM
Residue . / 5290
Chain PJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 691.49 Å3
Hydrophobicity 0.213
Hydrophilicity 1.604
Buriedness 0.837
Don/acc character 0.896
SiteScore 1.089
D Score 0.914

Compound SPM
Residue . / 5293
Chain SJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 935.70 Å3
Hydrophobicity 0.111
Hydrophilicity 1.684
Buriedness 0.826
Don/acc character 1.062
SiteScore 1.086
D Score 0.887

Compound SPM
Residue . / 5294
Chain TJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 674.00 Å3
Hydrophobicity 0.202
Hydrophilicity 1.268
Buriedness 0.786
Don/acc character 1.175
SiteScore 1.059
D Score 0.998