Complex 9frk
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.00 |
| System mass | 1005.46 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9frk |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1557 |
| Chain | MC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 697.32 Å3 |
| Hydrophobicity | 0.244 |
| Hydrophilicity | 1.339 |
| Buriedness | 0.884 |
| Don/acc character | 1.682 |
| SiteScore | 1.124 |
| D Score | 1.034 |
| Compound | SPM |
| Residue | . / 1558 |
| Chain | NC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 618.77 Å3 |
| Hydrophobicity | 0.177 |
| Hydrophilicity | 1.323 |
| Buriedness | 0.822 |
| Don/acc character | 2.476 |
| SiteScore | 1.233 |
| D Score | 1.002 |
| Compound | SPM |
| Residue | . / 1559 |
| Chain | OC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 714.81 Å3 |
| Hydrophobicity | 0.219 |
| Hydrophilicity | 1.268 |
| Buriedness | 0.748 |
| Don/acc character | 1.501 |
| SiteScore | 1.183 |
| D Score | 0.976 |
| Compound | SPM |
| Residue | . / 1560 |
| Chain | PC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 404.40 Å3 |
| Hydrophobicity | 0.152 |
| Hydrophilicity | 1.501 |
| Buriedness | 0.867 |
| Don/acc character | 1.203 |
| SiteScore | 0.962 |
| D Score | 0.777 |
| Compound | SPM |
| Residue | . / 1561 |
| Chain | QC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 659.25 Å3 |
| Hydrophobicity | 0.152 |
| Hydrophilicity | 1.204 |
| Buriedness | 0.833 |
| Don/acc character | 2.181 |
| SiteScore | 1.240 |
| D Score | 1.047 |
| Compound | SPM |
| Residue | . / 1562 |
| Chain | RC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 789.93 Å3 |
| Hydrophobicity | 0.526 |
| Hydrophilicity | 1.144 |
| Buriedness | 0.830 |
| Don/acc character | 1.276 |
| SiteScore | 1.088 |
| D Score | 1.065 |
| Compound | SPM |
| Residue | . / 1563 |
| Chain | SC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 785.47 Å3 |
| Hydrophobicity | 0.257 |
| Hydrophilicity | 1.351 |
| Buriedness | 0.888 |
| Don/acc character | 1.453 |
| SiteScore | 1.127 |
| D Score | 1.033 |
| Compound | SPM |
| Residue | . / 1564 |
| Chain | TC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 228.44 Å3 |
| Hydrophobicity | 0.200 |
| Hydrophilicity | 1.349 |
| Buriedness | 0.813 |
| Don/acc character | 1.125 |
| SiteScore | 0.902 |
| D Score | 0.571 |
| Compound | SPM |
| Residue | . / 1565 |
| Chain | UC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 760.09 Å3 |
| Hydrophobicity | 0.273 |
| Hydrophilicity | 1.271 |
| Buriedness | 0.844 |
| Don/acc character | 1.596 |
| SiteScore | 1.247 |
| D Score | 1.032 |
| Compound | SPM |
| Residue | . / 1566 |
| Chain | VC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 430.47 Å3 |
| Hydrophobicity | 0.189 |
| Hydrophilicity | 1.047 |
| Buriedness | 0.728 |
| Don/acc character | 1.307 |
| SiteScore | 0.860 |
| D Score | 0.830 |
| Compound | SPM |
| Residue | . / 1567 |
| Chain | WC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 795.76 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.266 |
| Buriedness | 0.783 |
| Don/acc character | 1.813 |
| SiteScore | 1.207 |
| D Score | 0.997 |
| Compound | SPM |
| Residue | . / 1568 |
| Chain | XC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 907.58 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 1.322 |
| Buriedness | 0.834 |
| Don/acc character | 1.482 |
| SiteScore | 1.241 |
| D Score | 1.009 |
| Compound | SPM |
| Residue | . / 1569 |
| Chain | YC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 347.46 Å3 |
| Hydrophobicity | 0.116 |
| Hydrophilicity | 0.961 |
| Buriedness | 0.645 |
| Don/acc character | 2.018 |
| SiteScore | 0.915 |
| D Score | 0.930 |
| Compound | SPM |
| Residue | . / 1570 |
| Chain | ZC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 637.98 Å3 |
| Hydrophobicity | 0.081 |
| Hydrophilicity | 1.410 |
| Buriedness | 0.796 |
| Don/acc character | 1.883 |
| SiteScore | 1.216 |
| D Score | 0.958 |
| Compound | SPM |
| Residue | . / 1571 |
| Chain | AD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 625.98 Å3 |
| Hydrophobicity | 0.142 |
| Hydrophilicity | 1.222 |
| Buriedness | 0.835 |
| Don/acc character | 1.999 |
| SiteScore | 1.242 |
| D Score | 1.043 |
| Compound | SPM |
| Residue | . / 1572 |
| Chain | BD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 667.48 Å3 |
| Hydrophobicity | 0.238 |
| Hydrophilicity | 1.331 |
| Buriedness | 0.872 |
| Don/acc character | 1.357 |
| SiteScore | 1.055 |
| D Score | 0.950 |
| Compound | SPM |
| Residue | . / 1573 |
| Chain | CD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 199.63 Å3 |
| Hydrophobicity | 0.055 |
| Hydrophilicity | 1.088 |
| Buriedness | 0.636 |
| Don/acc character | 2.621 |
| SiteScore | 0.929 |
| D Score | 0.736 |
| Compound | SPM |
| Residue | . / 1574 |
| Chain | DD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 766.61 Å3 |
| Hydrophobicity | 0.043 |
| Hydrophilicity | 1.381 |
| Buriedness | 0.758 |
| Don/acc character | 1.515 |
| SiteScore | 1.190 |
| D Score | 0.945 |
| Compound | SPM |
| Residue | . / 1575 |
| Chain | ED / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 799.88 Å3 |
| Hydrophobicity | 0.200 |
| Hydrophilicity | 1.049 |
| Buriedness | 0.749 |
| Don/acc character | 1.024 |
| SiteScore | 1.034 |
| D Score | 1.048 |
| Compound | SPM |
| Residue | . / 1577 |
| Chain | GD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 280.23 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.265 |
| Buriedness | 0.732 |
| Don/acc character | 1.214 |
| SiteScore | 1.173 |
| D Score | 0.967 |
| Compound | SPM |
| Residue | . / 1578 |
| Chain | HD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 424.98 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 1.076 |
| Buriedness | 0.695 |
| Don/acc character | 4.402 |
| SiteScore | 0.998 |
| D Score | 1.006 |
| Compound | SPM |
| Residue | . / 1579 |
| Chain | ID / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 450.36 Å3 |
| Hydrophobicity | 0.199 |
| Hydrophilicity | 1.343 |
| Buriedness | 0.818 |
| Don/acc character | 2.724 |
| SiteScore | 1.230 |
| D Score | 0.993 |
| Compound | SPM |
| Residue | . / 1580 |
| Chain | JD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 140.97 Å3 |
| Hydrophobicity | 0.732 |
| Hydrophilicity | 0.787 |
| Buriedness | 0.660 |
| Don/acc character | 3.137 |
| SiteScore | 0.835 |
| D Score | 0.654 |
| Compound | SPM |
| Residue | . / 1581 |
| Chain | KD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 498.04 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 1.349 |
| Buriedness | 0.795 |
| Don/acc character | 1.258 |
| SiteScore | 1.065 |
| D Score | 0.977 |
| Compound | SPM |
| Residue | . / 1582 |
| Chain | LD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 324.14 Å3 |
| Hydrophobicity | 0.137 |
| Hydrophilicity | 1.380 |
| Buriedness | 0.855 |
| Don/acc character | 1.875 |
| SiteScore | 0.953 |
| D Score | 0.570 |
| Compound | SPM |
| Residue | . / 1583 |
| Chain | MD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 520.67 Å3 |
| Hydrophobicity | 0.240 |
| Hydrophilicity | 1.403 |
| Buriedness | 0.849 |
| Don/acc character | 1.037 |
| SiteScore | 1.101 |
| D Score | 0.992 |
| Compound | SPM |
| Residue | . / 1584 |
| Chain | ND / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 139.26 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 1.602 |
| Buriedness | 0.832 |
| Don/acc character | 1.121 |
| SiteScore | 0.993 |
| D Score | 0.601 |
| Compound | SPM |
| Residue | . / 1585 |
| Chain | OD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 232.90 Å3 |
| Hydrophobicity | 0.306 |
| Hydrophilicity | 1.221 |
| Buriedness | 0.846 |
| Don/acc character | 0.905 |
| SiteScore | 0.874 |
| D Score | 0.761 |
| Compound | SPM |
| Residue | . / 1586 |
| Chain | PD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 234.96 Å3 |
| Hydrophobicity | 0.195 |
| Hydrophilicity | 0.920 |
| Buriedness | 0.621 |
| Don/acc character | 3.920 |
| SiteScore | 1.020 |
| D Score | 0.882 |
| Compound | SPM |
| Residue | . / 1587 |
| Chain | QD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 58.65 Å3 |
| Hydrophobicity | 0.019 |
| Hydrophilicity | 0.949 |
| Buriedness | 0.602 |
| Don/acc character | 2.848 |
| SiteScore | 0.591 |
| D Score | 0.334 |
| Compound | SPM |
| Residue | . / 1588 |
| Chain | RD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 730.93 Å3 |
| Hydrophobicity | 0.058 |
| Hydrophilicity | 1.166 |
| Buriedness | 0.728 |
| Don/acc character | 1.458 |
| SiteScore | 1.170 |
| D Score | 0.997 |
| Compound | SPM |
| Residue | . / 1589 |
| Chain | SD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 683.94 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.116 |
| Buriedness | 0.755 |
| Don/acc character | 1.975 |
| SiteScore | 0.973 |
| D Score | 0.946 |
| Compound | SPM |
| Residue | . / 1590 |
| Chain | TD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 465.11 Å3 |
| Hydrophobicity | 0.113 |
| Hydrophilicity | 1.173 |
| Buriedness | 0.734 |
| Don/acc character | 2.501 |
| SiteScore | 1.174 |
| D Score | 0.998 |
| Compound | SPM |
| Residue | . / 1591 |
| Chain | UD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 356.72 Å3 |
| Hydrophobicity | 0.304 |
| Hydrophilicity | 1.214 |
| Buriedness | 0.834 |
| Don/acc character | 1.184 |
| SiteScore | 1.222 |
| D Score | 1.021 |
| Compound | SPM |
| Residue | . / 1592 |
| Chain | VD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 915.12 Å3 |
| Hydrophobicity | 0.054 |
| Hydrophilicity | 1.644 |
| Buriedness | 0.886 |
| Don/acc character | 0.913 |
| SiteScore | 1.126 |
| D Score | 0.936 |