HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7g

System information

Experimental technique Electron Microscopy
Experimental resolution 3.54
System mass 3280.53 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7g
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound HMT
Residue . / 5292
Chain UK / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 791.30 Å3
Hydrophobicity 0.514
Hydrophilicity 1.153
Buriedness 0.794
Don/acc character 1.179
SiteScore 1.214
D Score 1.040

Compound SPM
Residue . / 5255
Chain JJ / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 420.52 Å3
Hydrophobicity 0.379
Hydrophilicity 0.977
Buriedness 0.694
Don/acc character 1.798
SiteScore 1.010
D Score 1.038

Compound SPM
Residue . / 5260
Chain OJ / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 322.76 Å3
Hydrophobicity 0.052
Hydrophilicity 1.276
Buriedness 0.622
Don/acc character 2.392
SiteScore 1.073
D Score 0.863

Compound SPM
Residue . / 5261
Chain PJ / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5264
Chain SJ / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 739.85 Å3
Hydrophobicity 0.084
Hydrophilicity 1.945
Buriedness 0.852
Don/acc character 1.069
SiteScore 1.103
D Score 0.818

Compound SPM
Residue . / 5285
Chain NK / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 519.99 Å3
Hydrophobicity 0.179
Hydrophilicity 1.525
Buriedness 0.843
Don/acc character 1.326
SiteScore 1.097
D Score 0.949

Compound SPM
Residue . / 5288
Chain QK / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 1528.75 Å3
Hydrophobicity 0.121
Hydrophilicity 1.551
Buriedness 0.821
Don/acc character 1.283
SiteScore 1.082
D Score 0.927

Compound SPM
Residue . / 5290
Chain SK / L5
Non-redundant True
Interacting RNA chains OA/L5
Volume 331.00 Å3
Hydrophobicity 0.592
Hydrophilicity 0.966
Buriedness 0.774
Don/acc character 1.346
SiteScore 0.819
D Score 0.773