Complex 9g30
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.35 |
| System mass | 3146.91 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 9g30 |
| Reference | Kolosova Olga, Zgadzay Yury, Stetsenko Artem, Sukhinina Anastasia P., Atamas Anastasia, Validov Shamil, Rogachev Andrey, Usachev Konstantin, Jenner Lasse, Dmitriev Sergey E., Yusupova Gulnara, Guskov Albert, Yusupov Marat. . Mechanism of read-through enhancement by aminoglycosides and mefloquine Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_58155.3,
NR_all_22526.9,
NR_all_83277.11,
NR_all_80456.2
BGSU version: 4.49 |
| Compound | GET |
| Residue | . / 3402 |
| Chain | DC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1, D/3 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/1: rRNA, D/3: rRNA |
| RNA family global | rRNA |
| Volume | 420.86 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 0.937 |
| Buriedness | 0.686 |
| Don/acc character | 2.675 |
| SiteScore | 0.755 |
| D Score | 0.822 |
| Kd | — |
| Compound | GET |
| Residue | . / 3403 |
| Chain | EC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1, E/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA, E/4: rRNA |
| RNA family global | rRNA |
| Volume | 710.70 Å3 |
| Hydrophobicity | 0.155 |
| Hydrophilicity | 1.299 |
| Buriedness | 0.774 |
| Don/acc character | 1.532 |
| SiteScore | 1.201 |
| D Score | 0.981 |
| Kd | — |
| Compound | GET |
| Residue | . / 3404 |
| Chain | FC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 728.53 Å3 |
| Hydrophobicity | 0.232 |
| Hydrophilicity | 1.389 |
| Buriedness | 0.757 |
| Don/acc character | 0.894 |
| SiteScore | 1.039 |
| D Score | 0.941 |
| Kd | — |
| Compound | GET |
| Residue | . / 3405 |
| Chain | GC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 694.92 Å3 |
| Hydrophobicity | 0.181 |
| Hydrophilicity | 1.050 |
| Buriedness | 0.740 |
| Don/acc character | 1.434 |
| SiteScore | 1.028 |
| D Score | 1.042 |
| Kd | — |
| Compound | GET |
| Residue | . / 3406 |
| Chain | HC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 706.58 Å3 |
| Hydrophobicity | 0.134 |
| Hydrophilicity | 1.034 |
| Buriedness | 0.753 |
| Don/acc character | 1.554 |
| SiteScore | 1.034 |
| D Score | 1.050 |
| Kd | — |
| Compound | GET |
| Residue | . / 3407 |
| Chain | IC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 212.32 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.428 |
| Buriedness | 0.780 |
| Don/acc character | 0.959 |
| SiteScore | 0.606 |
| D Score | 0.366 |
| Kd | — |
| Compound | GET |
| Residue | . / 3408 |
| Chain | JC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 239.76 Å3 |
| Hydrophobicity | 0.118 |
| Hydrophilicity | 1.272 |
| Buriedness | 0.802 |
| Don/acc character | 1.920 |
| SiteScore | 1.045 |
| D Score | 0.783 |
| Kd | — |
| Compound | GET |
| Residue | . / 3409 |
| Chain | KC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1, D/3 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA, D/3: rRNA |
| RNA family global | rRNA |
| Volume | 296.70 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 0.850 |
| Buriedness | 0.706 |
| Don/acc character | 1.819 |
| SiteScore | 1.098 |
| D Score | 0.966 |
| Kd | — |
| Compound | GET |
| Residue | . / 3410 |
| Chain | LC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | GET |
| Residue | . / 3411 |
| Chain | MC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 359.81 Å3 |
| Hydrophobicity | 0.155 |
| Hydrophilicity | 1.182 |
| Buriedness | 0.777 |
| Don/acc character | 1.340 |
| SiteScore | 0.838 |
| D Score | 0.746 |
| Kd | — |
| Compound | GET |
| Residue | . / 3412 |
| Chain | NC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 690.46 Å3 |
| Hydrophobicity | 0.210 |
| Hydrophilicity | 1.155 |
| Buriedness | 0.812 |
| Don/acc character | 2.200 |
| SiteScore | 1.226 |
| D Score | 1.050 |
| Kd | — |
| Compound | GET |
| Residue | . / 3413 |
| Chain | OC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 666.45 Å3 |
| Hydrophobicity | 0.192 |
| Hydrophilicity | 1.098 |
| Buriedness | 0.748 |
| Don/acc character | 1.687 |
| SiteScore | 1.033 |
| D Score | 1.031 |
| Kd | — |
| Compound | GET |
| Residue | . / 1801 |
| Chain | PC / A |
| Non-redundant | True |
| Interacting RNA chains | J/A |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | J/A: rRNA |
| RNA family global | rRNA |
| Volume | 256.91 Å3 |
| Hydrophobicity | 0.052 |
| Hydrophilicity | 0.994 |
| Buriedness | 0.621 |
| Don/acc character | 1.731 |
| SiteScore | 0.984 |
| D Score | 0.830 |
| Kd | — |
| Compound | GET |
| Residue | . / 1802 |
| Chain | QC / A |
| Non-redundant | True |
| Interacting RNA chains | J/A |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | J/A: rRNA |
| RNA family global | rRNA |
| Volume | 743.28 Å3 |
| Hydrophobicity | 0.189 |
| Hydrophilicity | 1.238 |
| Buriedness | 0.732 |
| Don/acc character | 0.858 |
| SiteScore | 1.022 |
| D Score | 0.975 |
| Kd | — |
| Compound | GET |
| Residue | . / 1803 |
| Chain | RC / A |
| Non-redundant | True |
| Interacting RNA chains | J/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | J/A: rRNA |
| RNA family global | rRNA |
| Volume | 184.88 Å3 |
| Hydrophobicity | 0.401 |
| Hydrophilicity | 0.951 |
| Buriedness | 0.723 |
| Don/acc character | 1.587 |
| SiteScore | 0.762 |
| D Score | 0.523 |
| Kd | — |
| Compound | GET |
| Residue | . / 1804 |
| Chain | SC / A |
| Non-redundant | True |
| Interacting RNA chains | AC/MR, J/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | J/A: rRNA, AC/MR: mRNA |
| RNA family global | multiple |
| Volume | 371.47 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.116 |
| Buriedness | 0.749 |
| Don/acc character | 2.274 |
| SiteScore | 1.184 |
| D Score | 1.026 |
| Kd | — |
| Compound | GET |
| Residue | . / 101 |
| Chain | AD / AT |
| Non-redundant | True |
| Interacting RNA chains | BC/AT |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BC/AT: tRNA |
| RNA family global | tRNA |
| Volume | 349.17 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.036 |
| Buriedness | 0.653 |
| Don/acc character | 1.371 |
| SiteScore | 0.970 |
| D Score | 0.800 |
| Kd | — |
| Compound | SPK |
| Residue | . / 3401 |
| Chain | CC / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | B/1: rRNA |
| RNA family global | rRNA |
| Volume | 542.97 Å3 |
| Hydrophobicity | 0.272 |
| Hydrophilicity | 1.274 |
| Buriedness | 0.885 |
| Don/acc character | 1.665 |
| SiteScore | 1.125 |
| D Score | 1.056 |
| Kd | — |