HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7l

System information

Experimental technique Electron Microscopy
Experimental resolution 2.92
System mass 3305.40 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7l
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain JI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 367.01 Å3
Hydrophobicity 0.475
Hydrophilicity 0.916
Buriedness 0.704
Don/acc character 1.484
SiteScore 1.028
D Score 1.064

Compound SPM
Residue . / 5264
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 269.60 Å3
Hydrophobicity 0.044
Hydrophilicity 1.069
Buriedness 0.583
Don/acc character 1.730
SiteScore 0.842
D Score 0.837

Compound SPM
Residue . / 5265
Chain PI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5268
Chain SI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 783.07 Å3
Hydrophobicity 0.186
Hydrophilicity 1.944
Buriedness 0.843
Don/acc character 1.089
SiteScore 1.097
D Score 0.812

Compound SPM
Residue . / 5290
Chain OJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 382.10 Å3
Hydrophobicity 0.171
Hydrophilicity 1.506
Buriedness 0.816
Don/acc character 0.983
SiteScore 0.639
D Score 0.374

Compound SPM
Residue . / 5293
Chain RJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1113.72 Å3
Hydrophobicity 0.137
Hydrophilicity 1.606
Buriedness 0.805
Don/acc character 1.074
SiteScore 1.071
D Score 0.899

Compound SPM
Residue . / 5294
Chain SJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 636.27 Å3
Hydrophobicity 0.182
Hydrophilicity 1.229
Buriedness 0.776
Don/acc character 1.329
SiteScore 1.052
D Score 1.005