Complex 9frl
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.97 |
| System mass | 1004.30 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9frl |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1548 |
| Chain | DC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 676.74 Å3 |
| Hydrophobicity | 0.411 |
| Hydrophilicity | 1.332 |
| Buriedness | 0.884 |
| Don/acc character | 1.193 |
| SiteScore | 1.275 |
| D Score | 1.036 |
| Compound | SPM |
| Residue | . / 1549 |
| Chain | EC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 616.03 Å3 |
| Hydrophobicity | 0.152 |
| Hydrophilicity | 1.426 |
| Buriedness | 0.823 |
| Don/acc character | 2.201 |
| SiteScore | 1.233 |
| D Score | 0.969 |
| Compound | SPM |
| Residue | . / 1550 |
| Chain | FC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 177.67 Å3 |
| Hydrophobicity | 0.065 |
| Hydrophilicity | 1.240 |
| Buriedness | 0.720 |
| Don/acc character | 3.130 |
| SiteScore | 0.626 |
| D Score | 0.415 |
| Compound | SPM |
| Residue | . / 1551 |
| Chain | GC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 272.00 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.563 |
| Buriedness | 0.862 |
| Don/acc character | 1.021 |
| SiteScore | 1.110 |
| D Score | 0.645 |
| Compound | SPM |
| Residue | . / 1552 |
| Chain | HC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 654.10 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.211 |
| Buriedness | 0.825 |
| Don/acc character | 2.221 |
| SiteScore | 1.235 |
| D Score | 1.040 |
| Compound | SPM |
| Residue | . / 1553 |
| Chain | IC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 794.73 Å3 |
| Hydrophobicity | 0.345 |
| Hydrophilicity | 1.184 |
| Buriedness | 0.822 |
| Don/acc character | 1.759 |
| SiteScore | 1.233 |
| D Score | 1.047 |
| Compound | SPM |
| Residue | . / 1554 |
| Chain | JC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 702.46 Å3 |
| Hydrophobicity | 0.171 |
| Hydrophilicity | 1.388 |
| Buriedness | 0.847 |
| Don/acc character | 1.343 |
| SiteScore | 1.250 |
| D Score | 0.996 |
| Compound | SPM |
| Residue | . / 1555 |
| Chain | KC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 221.92 Å3 |
| Hydrophobicity | 0.234 |
| Hydrophilicity | 1.342 |
| Buriedness | 0.798 |
| Don/acc character | 1.155 |
| SiteScore | 0.879 |
| D Score | 0.548 |
| Compound | SPM |
| Residue | . / 1556 |
| Chain | LC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 718.59 Å3 |
| Hydrophobicity | 0.264 |
| Hydrophilicity | 1.229 |
| Buriedness | 0.844 |
| Don/acc character | 1.735 |
| SiteScore | 1.248 |
| D Score | 1.046 |
| Compound | SPM |
| Residue | . / 1557 |
| Chain | MC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 443.84 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.092 |
| Buriedness | 0.728 |
| Don/acc character | 1.632 |
| SiteScore | 1.037 |
| D Score | 0.850 |
| Compound | SPM |
| Residue | . / 1558 |
| Chain | NC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 681.88 Å3 |
| Hydrophobicity | 0.054 |
| Hydrophilicity | 1.257 |
| Buriedness | 0.783 |
| Don/acc character | 1.710 |
| SiteScore | 1.207 |
| D Score | 1.000 |
| Compound | SPM |
| Residue | . / 1559 |
| Chain | OC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 867.79 Å3 |
| Hydrophobicity | 0.138 |
| Hydrophilicity | 1.313 |
| Buriedness | 0.836 |
| Don/acc character | 1.500 |
| SiteScore | 1.243 |
| D Score | 1.014 |
| Compound | SPM |
| Residue | . / 1560 |
| Chain | PC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 360.15 Å3 |
| Hydrophobicity | 0.102 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.645 |
| Don/acc character | 2.356 |
| SiteScore | 1.037 |
| D Score | 0.892 |
| Compound | SPM |
| Residue | . / 1561 |
| Chain | QC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 691.83 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 1.426 |
| Buriedness | 0.773 |
| Don/acc character | 1.658 |
| SiteScore | 1.200 |
| D Score | 0.939 |
| Compound | SPM |
| Residue | . / 1562 |
| Chain | RC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 610.20 Å3 |
| Hydrophobicity | 0.126 |
| Hydrophilicity | 1.216 |
| Buriedness | 0.831 |
| Don/acc character | 1.805 |
| SiteScore | 1.239 |
| D Score | 1.042 |
| Compound | SPM |
| Residue | . / 1563 |
| Chain | SC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 480.54 Å3 |
| Hydrophobicity | 0.163 |
| Hydrophilicity | 1.426 |
| Buriedness | 0.879 |
| Don/acc character | 1.132 |
| SiteScore | 1.151 |
| D Score | 0.849 |
| Compound | SPM |
| Residue | . / 1564 |
| Chain | TC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 197.23 Å3 |
| Hydrophobicity | 0.043 |
| Hydrophilicity | 1.077 |
| Buriedness | 0.629 |
| Don/acc character | 2.959 |
| SiteScore | 0.920 |
| D Score | 0.730 |
| Compound | SPM |
| Residue | . / 1565 |
| Chain | UC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 707.61 Å3 |
| Hydrophobicity | 0.018 |
| Hydrophilicity | 1.432 |
| Buriedness | 0.763 |
| Don/acc character | 1.576 |
| SiteScore | 1.193 |
| D Score | 0.931 |
| Compound | SPM |
| Residue | . / 1566 |
| Chain | VC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 292.92 Å3 |
| Hydrophobicity | 0.140 |
| Hydrophilicity | 0.951 |
| Buriedness | 0.737 |
| Don/acc character | 1.147 |
| SiteScore | 0.608 |
| D Score | 0.542 |
| Compound | SPM |
| Residue | . / 1567 |
| Chain | WC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 327.57 Å3 |
| Hydrophobicity | 0.121 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.734 |
| Don/acc character | 1.205 |
| SiteScore | 1.174 |
| D Score | 0.984 |
| Compound | SPM |
| Residue | . / 1568 |
| Chain | XC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 412.97 Å3 |
| Hydrophobicity | 0.158 |
| Hydrophilicity | 1.110 |
| Buriedness | 0.697 |
| Don/acc character | 3.776 |
| SiteScore | 1.131 |
| D Score | 0.972 |
| Compound | SPM |
| Residue | . / 1569 |
| Chain | YC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 294.29 Å3 |
| Hydrophobicity | 0.462 |
| Hydrophilicity | 0.887 |
| Buriedness | 0.715 |
| Don/acc character | 2.709 |
| SiteScore | 1.063 |
| D Score | 0.915 |
| Compound | SPM |
| Residue | . / 1570 |
| Chain | ZC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 281.26 Å3 |
| Hydrophobicity | 0.080 |
| Hydrophilicity | 1.365 |
| Buriedness | 0.855 |
| Don/acc character | 2.083 |
| SiteScore | 0.840 |
| D Score | 0.538 |
| Compound | SPM |
| Residue | . / 1571 |
| Chain | AD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 142.35 Å3 |
| Hydrophobicity | 0.030 |
| Hydrophilicity | 1.257 |
| Buriedness | 0.702 |
| Don/acc character | 3.284 |
| SiteScore | 0.703 |
| D Score | 0.375 |
| Compound | SPM |
| Residue | . / 1572 |
| Chain | BD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 500.44 Å3 |
| Hydrophobicity | 0.153 |
| Hydrophilicity | 1.398 |
| Buriedness | 0.841 |
| Don/acc character | 1.160 |
| SiteScore | 1.246 |
| D Score | 0.989 |
| Compound | SPM |
| Residue | . / 1573 |
| Chain | CD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 202.71 Å3 |
| Hydrophobicity | 0.075 |
| Hydrophilicity | 1.349 |
| Buriedness | 0.817 |
| Don/acc character | 0.952 |
| SiteScore | 0.761 |
| D Score | 0.389 |
| Compound | SPM |
| Residue | . / 1574 |
| Chain | DD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 709.32 Å3 |
| Hydrophobicity | 0.057 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.716 |
| Don/acc character | 1.769 |
| SiteScore | 1.162 |
| D Score | 1.009 |
| Compound | SPM |
| Residue | . / 1575 |
| Chain | ED / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 788.56 Å3 |
| Hydrophobicity | 0.161 |
| Hydrophilicity | 1.340 |
| Buriedness | 0.816 |
| Don/acc character | 1.216 |
| SiteScore | 1.229 |
| D Score | 0.993 |
| Compound | SPM |
| Residue | . / 1576 |
| Chain | FD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 496.66 Å3 |
| Hydrophobicity | 0.086 |
| Hydrophilicity | 1.171 |
| Buriedness | 0.723 |
| Don/acc character | 2.321 |
| SiteScore | 1.167 |
| D Score | 0.992 |
| Compound | SPM |
| Residue | . / 1577 |
| Chain | GD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 615.34 Å3 |
| Hydrophobicity | 0.193 |
| Hydrophilicity | 1.122 |
| Buriedness | 0.813 |
| Don/acc character | 2.974 |
| SiteScore | 1.193 |
| D Score | 1.019 |
| Compound | SPM |
| Residue | . / 1578 |
| Chain | HD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 817.71 Å3 |
| Hydrophobicity | 0.037 |
| Hydrophilicity | 1.683 |
| Buriedness | 0.886 |
| Don/acc character | 1.119 |
| SiteScore | 1.107 |
| D Score | 0.899 |