HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7h

System information

Experimental technique Electron Microscopy
Experimental resolution 3.68
System mass 3306.23 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7h
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound 3HE
Residue . / 5295
Chain TJ / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 311.79 Å3
Hydrophobicity 0.432
Hydrophilicity 0.990
Buriedness 0.661
Don/acc character 1.148
SiteScore 0.985
D Score 1.014

Compound HMT
Residue . / 5294
Chain SJ / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 825.94 Å3
Hydrophobicity 0.485
Hydrophilicity 1.115
Buriedness 0.772
Don/acc character 1.412
SiteScore 1.199
D Score 1.039

Compound SPM
Residue . / 5258
Chain II / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 352.26 Å3
Hydrophobicity 0.436
Hydrophilicity 0.885
Buriedness 0.679
Don/acc character 1.779
SiteScore 1.018
D Score 1.059

Compound SPM
Residue . / 5262
Chain MI / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 271.31 Å3
Hydrophobicity 0.087
Hydrophilicity 1.038
Buriedness 0.585
Don/acc character 2.975
SiteScore 0.985
D Score 0.837

Compound SPM
Residue . / 5263
Chain NI / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 373.53 Å3
Hydrophobicity 0.105
Hydrophilicity 1.236
Buriedness 0.637
Don/acc character 2.666
SiteScore 1.109
D Score 0.919

Compound SPM
Residue . / 5266
Chain QI / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 744.31 Å3
Hydrophobicity 0.105
Hydrophilicity 1.901
Buriedness 0.845
Don/acc character 1.012
SiteScore 1.098
D Score 0.827

Compound SPM
Residue . / 5287
Chain LJ / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 468.88 Å3
Hydrophobicity 0.111
Hydrophilicity 1.535
Buriedness 0.852
Don/acc character 1.146
SiteScore 0.942
D Score 0.745

Compound SPM
Residue . / 5290
Chain OJ / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 1170.32 Å3
Hydrophobicity 0.142
Hydrophilicity 1.553
Buriedness 0.824
Don/acc character 1.220
SiteScore 1.084
D Score 0.928

Compound SPM
Residue . / 5291
Chain PJ / L5
Non-redundant True
Interacting RNA chains D/L5
Volume 794.05 Å3
Hydrophobicity 0.156
Hydrophilicity 1.424
Buriedness 0.789
Don/acc character 1.285
SiteScore 1.061
D Score 0.949