Complex 9fqz
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.85 |
| System mass | 4049.20 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Homo |
| RCSB PDB Entry | 9fqz |
| Equivalence Class |
NR_all_46995.72,
NR_all_65061.63,
NR_all_69011.5
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 3HE |
| Residue | . / 5109 |
| Chain | TG / L5 |
| Non-redundant | True |
| Interacting RNA chains | CC/L5 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | CC/L5: rRNA |
| RNA family global | rRNA |
| Volume | 299.44 Å3 |
| Hydrophobicity | 0.489 |
| Hydrophilicity | 0.968 |
| Buriedness | 0.648 |
| Don/acc character | 1.067 |
| SiteScore | 0.959 |
| D Score | 0.985 |
| Kd | — |
| Compound | ANM |
| Residue | . / 5388 |
| Chain | MR / L5 |
| Non-redundant | True |
| Interacting RNA chains | CC/L5 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | CC/L5: rRNA |
| RNA family global | rRNA |
| Volume | 550.52 Å3 |
| Hydrophobicity | 0.512 |
| Hydrophilicity | 1.102 |
| Buriedness | 0.768 |
| Don/acc character | 1.540 |
| SiteScore | 1.197 |
| D Score | 1.042 |
| Kd | — |
| Compound | GDP |
| Residue | . / 901 |
| Chain | GC / CB |
| Non-redundant | True |
| Interacting RNA chains | CC/L5 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | CC/L5: rRNA |
| RNA family global | rRNA |
| Volume | 518.96 Å3 |
| Hydrophobicity | 0.136 |
| Hydrophilicity | 1.398 |
| Buriedness | 0.735 |
| Don/acc character | 0.490 |
| SiteScore | 1.025 |
| D Score | 0.926 |
| Kd | — |
| Compound | HYG |
| Residue | . / 1979 |
| Chain | EG / S2 |
| Non-redundant | True |
| Interacting RNA chains | UA/S2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | UA/S2: rRNA |
| RNA family global | rRNA |
| Volume | 202.37 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.302 |
| Buriedness | 0.660 |
| Don/acc character | 1.992 |
| SiteScore | 0.711 |
| D Score | 0.573 |
| Kd | — |