HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p78

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 3868.94 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p78
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain KI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 399.94 Å3
Hydrophobicity 0.375
Hydrophilicity 0.959
Buriedness 0.674
Don/acc character 1.540
SiteScore 1.150
D Score 1.032

Compound SPM
Residue . / 5263
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 328.59 Å3
Hydrophobicity 0.078
Hydrophilicity 1.221
Buriedness 0.638
Don/acc character 1.825
SiteScore 1.076
D Score 0.881

Compound SPM
Residue . / 5264
Chain PI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain SI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 741.57 Å3
Hydrophobicity 0.115
Hydrophilicity 1.912
Buriedness 0.851
Don/acc character 1.015
SiteScore 1.103
D Score 0.827

Compound SPM
Residue . / 5288
Chain NJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 540.91 Å3
Hydrophobicity 0.278
Hydrophilicity 1.403
Buriedness 0.813
Don/acc character 1.545
SiteScore 0.948
D Score 0.806

Compound SPM
Residue . / 5291
Chain QJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1302.03 Å3
Hydrophobicity 0.106
Hydrophilicity 1.588
Buriedness 0.833
Don/acc character 1.073
SiteScore 1.241
D Score 0.922

Compound SPM
Residue . / 5292
Chain RJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 630.09 Å3
Hydrophobicity 0.211
Hydrophilicity 1.229
Buriedness 0.777
Don/acc character 1.416
SiteScore 1.053
D Score 1.006