HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p72

System information

Experimental technique Electron Microscopy
Experimental resolution 2.80
System mass 3251.31 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p72
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain II / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 346.43 Å3
Hydrophobicity 0.376
Hydrophilicity 1.079
Buriedness 0.652
Don/acc character 1.282
SiteScore 0.969
D Score 0.979

Compound SPM
Residue . / 5263
Chain MI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 131.03 Å3
Hydrophobicity 0.188
Hydrophilicity 1.092
Buriedness 0.581
Don/acc character 1.455
SiteScore 0.857
D Score 0.658

Compound SPM
Residue . / 5264
Chain NI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain QI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 777.24 Å3
Hydrophobicity 0.112
Hydrophilicity 1.868
Buriedness 0.848
Don/acc character 1.221
SiteScore 1.100
D Score 0.840

Compound SPM
Residue . / 5289
Chain MJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 326.88 Å3
Hydrophobicity 0.036
Hydrophilicity 1.700
Buriedness 0.814
Don/acc character 0.777
SiteScore 0.718
D Score 0.413

Compound SPM
Residue . / 5292
Chain PJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1094.17 Å3
Hydrophobicity 0.127
Hydrophilicity 1.585
Buriedness 0.813
Don/acc character 1.100
SiteScore 1.077
D Score 0.911

Compound SPM
Residue . / 5293
Chain QJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 706.58 Å3
Hydrophobicity 0.144
Hydrophilicity 1.331
Buriedness 0.791
Don/acc character 0.984
SiteScore 1.062
D Score 0.981