Complex 9fra
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.80 |
| System mass | 1007.13 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fra |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1595 |
| Chain | ZD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 218.15 Å3 |
| Hydrophobicity | 0.652 |
| Hydrophilicity | 1.020 |
| Buriedness | 0.712 |
| Don/acc character | 2.701 |
| SiteScore | 1.035 |
| D Score | 0.870 |
| Compound | SPM |
| Residue | . / 1554 |
| Chain | KC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 785.47 Å3 |
| Hydrophobicity | 0.352 |
| Hydrophilicity | 1.302 |
| Buriedness | 0.864 |
| Don/acc character | 1.654 |
| SiteScore | 1.111 |
| D Score | 1.034 |
| Compound | SPM |
| Residue | . / 1555 |
| Chain | LC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 433.90 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.812 |
| Don/acc character | 2.222 |
| SiteScore | 0.861 |
| D Score | 0.756 |
| Compound | SPM |
| Residue | . / 1556 |
| Chain | MC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 213.35 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.227 |
| Buriedness | 0.746 |
| Don/acc character | 2.213 |
| SiteScore | 0.671 |
| D Score | 0.435 |
| Compound | SPM |
| Residue | . / 1557 |
| Chain | NC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 347.80 Å3 |
| Hydrophobicity | 0.158 |
| Hydrophilicity | 1.526 |
| Buriedness | 0.875 |
| Don/acc character | 0.840 |
| SiteScore | 0.934 |
| D Score | 0.731 |
| Compound | SPM |
| Residue | . / 1558 |
| Chain | OC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 655.13 Å3 |
| Hydrophobicity | 0.167 |
| Hydrophilicity | 1.161 |
| Buriedness | 0.839 |
| Don/acc character | 2.002 |
| SiteScore | 0.917 |
| D Score | 1.065 |
| Compound | SPM |
| Residue | . / 1559 |
| Chain | PC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 701.09 Å3 |
| Hydrophobicity | 0.502 |
| Hydrophilicity | 1.145 |
| Buriedness | 0.835 |
| Don/acc character | 1.297 |
| SiteScore | 1.092 |
| D Score | 1.068 |
| Compound | SPM |
| Residue | . / 1560 |
| Chain | QC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 832.12 Å3 |
| Hydrophobicity | 0.200 |
| Hydrophilicity | 1.411 |
| Buriedness | 0.882 |
| Don/acc character | 1.557 |
| SiteScore | 1.123 |
| D Score | 1.009 |
| Compound | SPM |
| Residue | . / 1561 |
| Chain | RC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 270.97 Å3 |
| Hydrophobicity | 0.123 |
| Hydrophilicity | 1.149 |
| Buriedness | 0.821 |
| Don/acc character | 1.292 |
| SiteScore | 0.887 |
| D Score | 0.615 |
| Compound | SPM |
| Residue | . / 1562 |
| Chain | SC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 796.45 Å3 |
| Hydrophobicity | 0.210 |
| Hydrophilicity | 1.302 |
| Buriedness | 0.843 |
| Don/acc character | 1.660 |
| SiteScore | 1.247 |
| D Score | 1.021 |
| Compound | SPM |
| Residue | . / 1563 |
| Chain | TC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 521.02 Å3 |
| Hydrophobicity | 0.109 |
| Hydrophilicity | 1.040 |
| Buriedness | 0.720 |
| Don/acc character | 2.005 |
| SiteScore | 0.887 |
| D Score | 0.868 |
| Compound | SPM |
| Residue | . / 1564 |
| Chain | UC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 628.03 Å3 |
| Hydrophobicity | 0.039 |
| Hydrophilicity | 1.205 |
| Buriedness | 0.783 |
| Don/acc character | 1.840 |
| SiteScore | 1.207 |
| D Score | 1.017 |
| Compound | SPM |
| Residue | . / 1565 |
| Chain | VC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 777.58 Å3 |
| Hydrophobicity | 0.045 |
| Hydrophilicity | 1.354 |
| Buriedness | 0.831 |
| Don/acc character | 1.482 |
| SiteScore | 1.239 |
| D Score | 0.997 |
| Compound | SPM |
| Residue | . / 1566 |
| Chain | WC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 332.71 Å3 |
| Hydrophobicity | 0.163 |
| Hydrophilicity | 0.976 |
| Buriedness | 0.642 |
| Don/acc character | 2.047 |
| SiteScore | 0.953 |
| D Score | 0.979 |
| Compound | SPM |
| Residue | . / 1567 |
| Chain | XC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 693.89 Å3 |
| Hydrophobicity | 0.084 |
| Hydrophilicity | 1.576 |
| Buriedness | 0.850 |
| Don/acc character | 1.145 |
| SiteScore | 1.101 |
| D Score | 0.936 |
| Compound | SPM |
| Residue | . / 1568 |
| Chain | YC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 714.47 Å3 |
| Hydrophobicity | 0.104 |
| Hydrophilicity | 1.258 |
| Buriedness | 0.827 |
| Don/acc character | 1.904 |
| SiteScore | 1.236 |
| D Score | 1.026 |
| Compound | SPM |
| Residue | . / 1569 |
| Chain | ZC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 499.07 Å3 |
| Hydrophobicity | 0.306 |
| Hydrophilicity | 1.368 |
| Buriedness | 0.890 |
| Don/acc character | 1.228 |
| SiteScore | 1.099 |
| D Score | 0.990 |
| Compound | SPM |
| Residue | . / 1570 |
| Chain | AD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 205.80 Å3 |
| Hydrophobicity | 0.037 |
| Hydrophilicity | 1.153 |
| Buriedness | 0.648 |
| Don/acc character | 3.352 |
| SiteScore | 0.917 |
| D Score | 0.697 |
| Compound | SPM |
| Residue | . / 1571 |
| Chain | BD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 799.19 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.383 |
| Buriedness | 0.760 |
| Don/acc character | 1.728 |
| SiteScore | 1.191 |
| D Score | 0.945 |
| Compound | SPM |
| Residue | . / 1572 |
| Chain | CD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 676.05 Å3 |
| Hydrophobicity | 0.230 |
| Hydrophilicity | 1.008 |
| Buriedness | 0.746 |
| Don/acc character | 0.985 |
| SiteScore | 1.039 |
| D Score | 1.059 |
| Compound | SPM |
| Residue | . / 1573 |
| Chain | DD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 306.64 Å3 |
| Hydrophobicity | 0.397 |
| Hydrophilicity | 1.336 |
| Buriedness | 0.847 |
| Don/acc character | 2.196 |
| SiteScore | 0.920 |
| D Score | 0.783 |
| Compound | SPM |
| Residue | . / 1574 |
| Chain | ED / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 287.78 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.250 |
| Buriedness | 0.741 |
| Don/acc character | 1.659 |
| SiteScore | 1.178 |
| D Score | 0.977 |
| Compound | SPM |
| Residue | . / 1575 |
| Chain | FD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 395.82 Å3 |
| Hydrophobicity | 0.156 |
| Hydrophilicity | 1.156 |
| Buriedness | 0.713 |
| Don/acc character | 2.772 |
| SiteScore | 1.010 |
| D Score | 0.991 |
| Compound | SPM |
| Residue | . / 1576 |
| Chain | GD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 446.24 Å3 |
| Hydrophobicity | 0.264 |
| Hydrophilicity | 1.263 |
| Buriedness | 0.821 |
| Don/acc character | 1.736 |
| SiteScore | 1.232 |
| D Score | 1.021 |
| Compound | SPM |
| Residue | . / 1577 |
| Chain | HD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 398.91 Å3 |
| Hydrophobicity | 0.310 |
| Hydrophilicity | 0.961 |
| Buriedness | 0.696 |
| Don/acc character | 1.794 |
| SiteScore | 1.091 |
| D Score | 0.951 |
| Compound | SPM |
| Residue | . / 1578 |
| Chain | ID / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 419.15 Å3 |
| Hydrophobicity | 0.036 |
| Hydrophilicity | 1.632 |
| Buriedness | 0.767 |
| Don/acc character | 0.884 |
| SiteScore | 1.046 |
| D Score | 0.868 |
| Compound | SPM |
| Residue | . / 1579 |
| Chain | JD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 327.57 Å3 |
| Hydrophobicity | 0.137 |
| Hydrophilicity | 1.357 |
| Buriedness | 0.841 |
| Don/acc character | 1.228 |
| SiteScore | 0.974 |
| D Score | 0.672 |
| Compound | SPM |
| Residue | . / 1580 |
| Chain | KD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 123.82 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.461 |
| Buriedness | 0.722 |
| Don/acc character | 2.253 |
| SiteScore | 0.744 |
| D Score | 0.356 |
| Compound | SPM |
| Residue | . / 1581 |
| Chain | LD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 495.29 Å3 |
| Hydrophobicity | 0.134 |
| Hydrophilicity | 1.429 |
| Buriedness | 0.845 |
| Don/acc character | 1.078 |
| SiteScore | 1.099 |
| D Score | 0.981 |
| Compound | SPM |
| Residue | . / 1582 |
| Chain | MD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 278.86 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.462 |
| Buriedness | 0.793 |
| Don/acc character | 1.020 |
| SiteScore | 1.206 |
| D Score | 0.930 |
| Compound | SPM |
| Residue | . / 1583 |
| Chain | ND / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 240.44 Å3 |
| Hydrophobicity | 0.469 |
| Hydrophilicity | 0.989 |
| Buriedness | 0.830 |
| Don/acc character | 2.763 |
| SiteScore | 0.693 |
| D Score | 0.596 |
| Compound | SPM |
| Residue | . / 1585 |
| Chain | PD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 211.29 Å3 |
| Hydrophobicity | 0.187 |
| Hydrophilicity | 0.883 |
| Buriedness | 0.633 |
| Don/acc character | 2.667 |
| SiteScore | 0.990 |
| D Score | 0.844 |
| Compound | SPM |
| Residue | . / 1586 |
| Chain | QD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 99.47 Å3 |
| Hydrophobicity | 0.011 |
| Hydrophilicity | 0.992 |
| Buriedness | 0.635 |
| Don/acc character | 2.139 |
| SiteScore | 0.677 |
| D Score | 0.433 |
| Compound | SPM |
| Residue | . / 1587 |
| Chain | RD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 195.85 Å3 |
| Hydrophobicity | 0.084 |
| Hydrophilicity | 1.356 |
| Buriedness | 0.696 |
| Don/acc character | 1.145 |
| SiteScore | 0.983 |
| D Score | 0.704 |
| Compound | SPM |
| Residue | . / 1588 |
| Chain | SD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 730.93 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.158 |
| Buriedness | 0.704 |
| Don/acc character | 1.521 |
| SiteScore | 1.154 |
| D Score | 0.985 |
| Compound | SPM |
| Residue | . / 1589 |
| Chain | TD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 434.92 Å3 |
| Hydrophobicity | 0.605 |
| Hydrophilicity | 1.365 |
| Buriedness | 0.876 |
| Don/acc character | 0.770 |
| SiteScore | 1.119 |
| D Score | 1.021 |
| Compound | SPM |
| Residue | . / 1590 |
| Chain | UD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 322.42 Å3 |
| Hydrophobicity | 0.046 |
| Hydrophilicity | 1.149 |
| Buriedness | 0.773 |
| Don/acc character | 3.930 |
| SiteScore | 0.645 |
| D Score | 0.510 |
| Compound | SPM |
| Residue | . / 1591 |
| Chain | VD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 398.22 Å3 |
| Hydrophobicity | 0.212 |
| Hydrophilicity | 1.261 |
| Buriedness | 0.850 |
| Don/acc character | 1.108 |
| SiteScore | 1.010 |
| D Score | 0.730 |
| Compound | SPM |
| Residue | . / 1592 |
| Chain | WD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 413.66 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.136 |
| Buriedness | 0.720 |
| Don/acc character | 2.257 |
| SiteScore | 1.165 |
| D Score | 1.002 |
| Compound | SPM |
| Residue | . / 1593 |
| Chain | XD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 633.52 Å3 |
| Hydrophobicity | 0.191 |
| Hydrophilicity | 1.131 |
| Buriedness | 0.826 |
| Don/acc character | 2.403 |
| SiteScore | 1.206 |
| D Score | 1.028 |
| Compound | SPM |
| Residue | . / 1594 |
| Chain | YD / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 499.41 Å3 |
| Hydrophobicity | 0.077 |
| Hydrophilicity | 1.727 |
| Buriedness | 0.894 |
| Don/acc character | 0.844 |
| SiteScore | 1.003 |
| D Score | 0.749 |