Complex 9e71
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.36 |
| System mass | 2559.27 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Pyrobaculum |
| RCSB PDB Entry | 9e71 |
| Compound | SPM |
| Residue | . / 3105 |
| Chain | VB / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 447.61 Å3 |
| Hydrophobicity | 0.054 |
| Hydrophilicity | 1.253 |
| Buriedness | 0.767 |
| Don/acc character | 1.786 |
| SiteScore | 1.046 |
| D Score | 0.991 |
| Compound | SPM |
| Residue | . / 3110 |
| Chain | AC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 1063.30 Å3 |
| Hydrophobicity | 0.105 |
| Hydrophilicity | 1.369 |
| Buriedness | 0.826 |
| Don/acc character | 1.985 |
| SiteScore | 1.085 |
| D Score | 0.989 |
| Compound | SPM |
| Residue | . / 3111 |
| Chain | BC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 1088.00 Å3 |
| Hydrophobicity | 0.159 |
| Hydrophilicity | 1.387 |
| Buriedness | 0.776 |
| Don/acc character | 1.989 |
| SiteScore | 1.052 |
| D Score | 0.953 |
| Compound | SPM |
| Residue | . / 3117 |
| Chain | HC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 303.21 Å3 |
| Hydrophobicity | 0.119 |
| Hydrophilicity | 0.990 |
| Buriedness | 0.655 |
| Don/acc character | 1.866 |
| SiteScore | 0.900 |
| D Score | 0.906 |
| Compound | SPM |
| Residue | . / 3118 |
| Chain | IC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 853.73 Å3 |
| Hydrophobicity | 0.059 |
| Hydrophilicity | 1.214 |
| Buriedness | 0.746 |
| Don/acc character | 2.879 |
| SiteScore | 1.032 |
| D Score | 0.992 |
| Compound | SPM |
| Residue | . / 3119 |
| Chain | JC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 317.27 Å3 |
| Hydrophobicity | 0.028 |
| Hydrophilicity | 1.195 |
| Buriedness | 0.660 |
| Don/acc character | 1.449 |
| SiteScore | 0.893 |
| D Score | 0.842 |
| Compound | SPM |
| Residue | . / 3123 |
| Chain | NC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 1031.40 Å3 |
| Hydrophobicity | 0.049 |
| Hydrophilicity | 1.381 |
| Buriedness | 0.739 |
| Don/acc character | 1.224 |
| SiteScore | 1.027 |
| D Score | 0.933 |
| Compound | SPM |
| Residue | . / 3124 |
| Chain | OC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 317.27 Å3 |
| Hydrophobicity | 0.018 |
| Hydrophilicity | 1.383 |
| Buriedness | 0.751 |
| Don/acc character | 0.760 |
| SiteScore | 0.954 |
| D Score | 0.835 |
| Compound | SPM |
| Residue | . / 3125 |
| Chain | PC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 979.26 Å3 |
| Hydrophobicity | 0.062 |
| Hydrophilicity | 1.431 |
| Buriedness | 0.740 |
| Don/acc character | 1.865 |
| SiteScore | 1.028 |
| D Score | 0.918 |
| Compound | SPM |
| Residue | . / 3131 |
| Chain | VC / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 329.62 Å3 |
| Hydrophobicity | 0.072 |
| Hydrophilicity | 1.170 |
| Buriedness | 0.606 |
| Don/acc character | 1.663 |
| SiteScore | 0.836 |
| D Score | 0.791 |
| Compound | SPM |
| Residue | . / 3136 |
| Chain | AD / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 424.63 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.518 |
| Buriedness | 0.783 |
| Don/acc character | 1.603 |
| SiteScore | 1.042 |
| D Score | 0.896 |
| Compound | SPM |
| Residue | . / 3137 |
| Chain | BD / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 708.29 Å3 |
| Hydrophobicity | 0.061 |
| Hydrophilicity | 1.179 |
| Buriedness | 0.740 |
| Don/acc character | 2.175 |
| SiteScore | 1.028 |
| D Score | 1.000 |
| Compound | SPM |
| Residue | . / 3138 |
| Chain | CD / 1 |
| Non-redundant | False |
| Interacting RNA chains | B/1 |
| Volume | 578.98 Å3 |
| Hydrophobicity | 0.215 |
| Hydrophilicity | 1.280 |
| Buriedness | 0.798 |
| Don/acc character | 1.267 |
| SiteScore | 1.067 |
| D Score | 1.002 |
| Compound | SPM |
| Residue | . / 3141 |
| Chain | FD / 1 |
| Non-redundant | True |
| Interacting RNA chains | B/1 |
| Volume | 471.62 Å3 |
| Hydrophobicity | 0.086 |
| Hydrophilicity | 1.170 |
| Buriedness | 0.690 |
| Don/acc character | 1.690 |
| SiteScore | 0.991 |
| D Score | 0.968 |
| Compound | SPM |
| Residue | . / 3004 |
| Chain | AK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | SPM |
| Residue | . / 3006 |
| Chain | CK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | 278.86 Å3 |
| Hydrophobicity | 0.040 |
| Hydrophilicity | 1.306 |
| Buriedness | 0.743 |
| Don/acc character | 1.480 |
| SiteScore | 0.988 |
| D Score | 0.907 |
| Compound | SPM |
| Residue | . / 3011 |
| Chain | HK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | 98.78 Å3 |
| Hydrophobicity | 0.063 |
| Hydrophilicity | 1.718 |
| Buriedness | 0.705 |
| Don/acc character | 0.610 |
| SiteScore | 0.717 |
| D Score | 0.435 |
| Compound | SPM |
| Residue | . / 3013 |
| Chain | JK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | 1296.20 Å3 |
| Hydrophobicity | 0.087 |
| Hydrophilicity | 1.385 |
| Buriedness | 0.773 |
| Don/acc character | 1.505 |
| SiteScore | 1.050 |
| D Score | 0.952 |
| Compound | SPM |
| Residue | . / 3015 |
| Chain | LK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | 348.14 Å3 |
| Hydrophobicity | 0.367 |
| Hydrophilicity | 1.105 |
| Buriedness | 0.792 |
| Don/acc character | 1.919 |
| SiteScore | 1.063 |
| D Score | 1.055 |
| Compound | SPM |
| Residue | . / 3018 |
| Chain | OK / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |