HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7c

System information

Experimental technique Electron Microscopy
Experimental resolution 2.78
System mass 3868.94 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7c
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5258
Chain JI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 378.67 Å3
Hydrophobicity 0.396
Hydrophilicity 0.931
Buriedness 0.684
Don/acc character 1.377
SiteScore 1.162
D Score 1.047

Compound SPM
Residue . / 5262
Chain NI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 197.57 Å3
Hydrophobicity 0.109
Hydrophilicity 1.182
Buriedness 0.595
Don/acc character 1.892
SiteScore 0.948
D Score 0.741

Compound SPM
Residue . / 5263
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5266
Chain RI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 891.11 Å3
Hydrophobicity 0.112
Hydrophilicity 1.803
Buriedness 0.835
Don/acc character 0.876
SiteScore 1.091
D Score 0.853

Compound SPM
Residue . / 5287
Chain MJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 859.22 Å3
Hydrophobicity 0.177
Hydrophilicity 1.536
Buriedness 0.836
Don/acc character 1.118
SiteScore 1.085
D Score 0.931

Compound SPM
Residue . / 5290
Chain PJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1025.57 Å3
Hydrophobicity 0.191
Hydrophilicity 1.474
Buriedness 0.809
Don/acc character 1.060
SiteScore 1.075
D Score 0.945

Compound SPM
Residue . / 5292
Chain RJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 690.46 Å3
Hydrophobicity 0.221
Hydrophilicity 1.260
Buriedness 0.776
Don/acc character 1.088
SiteScore 1.052
D Score 0.995