Complex 9fs6
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 1012.79 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fs6 |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Equivalence Class |
NR_all_87365.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 1501 |
| Chain | JA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 740.19 Å3 |
| Hydrophobicity | 0.181 |
| Hydrophilicity | 1.403 |
| Buriedness | 0.897 |
| Don/acc character | 1.369 |
| SiteScore | 1.283 |
| D Score | 1.021 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1502 |
| Chain | KA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 559.78 Å3 |
| Hydrophobicity | 0.186 |
| Hydrophilicity | 1.322 |
| Buriedness | 0.829 |
| Don/acc character | 1.983 |
| SiteScore | 1.238 |
| D Score | 1.007 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1503 |
| Chain | LA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 797.48 Å3 |
| Hydrophobicity | 0.206 |
| Hydrophilicity | 1.073 |
| Buriedness | 0.739 |
| Don/acc character | 2.158 |
| SiteScore | 1.177 |
| D Score | 1.033 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1504 |
| Chain | MA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 464.08 Å3 |
| Hydrophobicity | 0.039 |
| Hydrophilicity | 1.548 |
| Buriedness | 0.796 |
| Don/acc character | 1.209 |
| SiteScore | 0.829 |
| D Score | 0.610 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1505 |
| Chain | NA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 756.32 Å3 |
| Hydrophobicity | 0.108 |
| Hydrophilicity | 1.189 |
| Buriedness | 0.825 |
| Don/acc character | 2.102 |
| SiteScore | 1.235 |
| D Score | 1.048 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1506 |
| Chain | OA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 752.54 Å3 |
| Hydrophobicity | 0.410 |
| Hydrophilicity | 1.190 |
| Buriedness | 0.811 |
| Don/acc character | 1.129 |
| SiteScore | 1.226 |
| D Score | 1.039 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1507 |
| Chain | PA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 680.17 Å3 |
| Hydrophobicity | 0.223 |
| Hydrophilicity | 1.338 |
| Buriedness | 0.824 |
| Don/acc character | 1.779 |
| SiteScore | 1.234 |
| D Score | 0.998 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1508 |
| Chain | QA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 260.34 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.250 |
| Buriedness | 0.801 |
| Don/acc character | 1.033 |
| SiteScore | 0.944 |
| D Score | 0.660 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1509 |
| Chain | RA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 907.58 Å3 |
| Hydrophobicity | 0.251 |
| Hydrophilicity | 1.280 |
| Buriedness | 0.834 |
| Don/acc character | 1.585 |
| SiteScore | 1.241 |
| D Score | 1.023 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1510 |
| Chain | SA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 641.75 Å3 |
| Hydrophobicity | 0.097 |
| Hydrophilicity | 1.031 |
| Buriedness | 0.730 |
| Don/acc character | 2.123 |
| SiteScore | 0.895 |
| D Score | 0.877 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1511 |
| Chain | TA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 697.66 Å3 |
| Hydrophobicity | 0.035 |
| Hydrophilicity | 1.107 |
| Buriedness | 0.731 |
| Don/acc character | 2.151 |
| SiteScore | 1.172 |
| D Score | 1.018 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1512 |
| Chain | UA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 818.74 Å3 |
| Hydrophobicity | 0.095 |
| Hydrophilicity | 1.364 |
| Buriedness | 0.839 |
| Don/acc character | 1.753 |
| SiteScore | 1.244 |
| D Score | 0.999 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1513 |
| Chain | VA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 324.48 Å3 |
| Hydrophobicity | 0.146 |
| Hydrophilicity | 0.974 |
| Buriedness | 0.646 |
| Don/acc character | 2.147 |
| SiteScore | 1.083 |
| D Score | 0.952 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1514 |
| Chain | WA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 747.40 Å3 |
| Hydrophobicity | 0.062 |
| Hydrophilicity | 1.566 |
| Buriedness | 0.822 |
| Don/acc character | 1.506 |
| SiteScore | 1.233 |
| D Score | 0.923 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1515 |
| Chain | XA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 409.89 Å3 |
| Hydrophobicity | 0.056 |
| Hydrophilicity | 1.450 |
| Buriedness | 0.859 |
| Don/acc character | 2.147 |
| SiteScore | 1.180 |
| D Score | 0.883 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1516 |
| Chain | YA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 623.57 Å3 |
| Hydrophobicity | 0.385 |
| Hydrophilicity | 1.331 |
| Buriedness | 0.899 |
| Don/acc character | 1.238 |
| SiteScore | 1.135 |
| D Score | 1.046 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1517 |
| Chain | ZA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 183.85 Å3 |
| Hydrophobicity | 0.029 |
| Hydrophilicity | 1.026 |
| Buriedness | 0.632 |
| Don/acc character | 2.992 |
| SiteScore | 0.900 |
| D Score | 0.716 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1518 |
| Chain | AB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 734.36 Å3 |
| Hydrophobicity | 0.032 |
| Hydrophilicity | 1.363 |
| Buriedness | 0.746 |
| Don/acc character | 1.570 |
| SiteScore | 1.182 |
| D Score | 0.943 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1519 |
| Chain | BB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 678.11 Å3 |
| Hydrophobicity | 0.283 |
| Hydrophilicity | 0.973 |
| Buriedness | 0.748 |
| Don/acc character | 1.169 |
| SiteScore | 1.197 |
| D Score | 1.072 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1520 |
| Chain | CB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 624.60 Å3 |
| Hydrophobicity | 0.250 |
| Hydrophilicity | 1.108 |
| Buriedness | 0.752 |
| Don/acc character | 2.115 |
| SiteScore | 1.036 |
| D Score | 1.030 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1521 |
| Chain | DB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 315.56 Å3 |
| Hydrophobicity | 0.110 |
| Hydrophilicity | 1.183 |
| Buriedness | 0.743 |
| Don/acc character | 1.505 |
| SiteScore | 1.180 |
| D Score | 1.000 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1522 |
| Chain | EB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 380.04 Å3 |
| Hydrophobicity | 0.186 |
| Hydrophilicity | 1.112 |
| Buriedness | 0.704 |
| Don/acc character | 3.029 |
| SiteScore | 1.085 |
| D Score | 0.911 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1523 |
| Chain | FB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 524.45 Å3 |
| Hydrophobicity | 0.302 |
| Hydrophilicity | 1.235 |
| Buriedness | 0.792 |
| Don/acc character | 1.734 |
| SiteScore | 1.213 |
| D Score | 1.013 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1524 |
| Chain | GB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 474.03 Å3 |
| Hydrophobicity | 0.180 |
| Hydrophilicity | 1.117 |
| Buriedness | 0.716 |
| Don/acc character | 1.490 |
| SiteScore | 0.990 |
| D Score | 0.977 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1525 |
| Chain | HB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 476.77 Å3 |
| Hydrophobicity | 0.179 |
| Hydrophilicity | 1.313 |
| Buriedness | 0.774 |
| Don/acc character | 1.374 |
| SiteScore | 1.201 |
| D Score | 0.977 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1526 |
| Chain | IB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 462.02 Å3 |
| Hydrophobicity | 0.053 |
| Hydrophilicity | 1.582 |
| Buriedness | 0.821 |
| Don/acc character | 1.392 |
| SiteScore | 1.232 |
| D Score | 0.917 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1527 |
| Chain | JB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 779.98 Å3 |
| Hydrophobicity | 0.101 |
| Hydrophilicity | 1.521 |
| Buriedness | 0.850 |
| Don/acc character | 1.058 |
| SiteScore | 1.252 |
| D Score | 0.954 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1528 |
| Chain | KB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 466.82 Å3 |
| Hydrophobicity | 0.128 |
| Hydrophilicity | 1.486 |
| Buriedness | 0.851 |
| Don/acc character | 0.976 |
| SiteScore | 1.252 |
| D Score | 0.966 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1529 |
| Chain | LB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 186.59 Å3 |
| Hydrophobicity | 0.346 |
| Hydrophilicity | 1.218 |
| Buriedness | 0.869 |
| Don/acc character | 1.118 |
| SiteScore | 0.809 |
| D Score | 0.672 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1530 |
| Chain | MB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | SPM |
| Residue | . / 1531 |
| Chain | NB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 161.55 Å3 |
| Hydrophobicity | 0.750 |
| Hydrophilicity | 0.963 |
| Buriedness | 0.753 |
| Don/acc character | 0.618 |
| SiteScore | 0.921 |
| D Score | 0.717 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1532 |
| Chain | OB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 329.97 Å3 |
| Hydrophobicity | 0.151 |
| Hydrophilicity | 1.228 |
| Buriedness | 0.688 |
| Don/acc character | 1.533 |
| SiteScore | 1.066 |
| D Score | 0.854 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1533 |
| Chain | PB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 314.53 Å3 |
| Hydrophobicity | 0.017 |
| Hydrophilicity | 1.188 |
| Buriedness | 0.771 |
| Don/acc character | 1.725 |
| SiteScore | 0.785 |
| D Score | 0.485 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1534 |
| Chain | QB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 630.78 Å3 |
| Hydrophobicity | 0.096 |
| Hydrophilicity | 1.142 |
| Buriedness | 0.762 |
| Don/acc character | 2.169 |
| SiteScore | 1.013 |
| D Score | 0.795 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1535 |
| Chain | RB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 388.96 Å3 |
| Hydrophobicity | 0.359 |
| Hydrophilicity | 1.215 |
| Buriedness | 0.841 |
| Don/acc character | 1.620 |
| SiteScore | 0.959 |
| D Score | 0.681 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1536 |
| Chain | SB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 343.69 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.100 |
| Buriedness | 0.675 |
| Don/acc character | 3.623 |
| SiteScore | 1.134 |
| D Score | 0.986 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1537 |
| Chain | TB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 738.48 Å3 |
| Hydrophobicity | 0.212 |
| Hydrophilicity | 1.081 |
| Buriedness | 0.797 |
| Don/acc character | 3.180 |
| SiteScore | 1.216 |
| D Score | 1.066 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1538 |
| Chain | UB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | 123.14 Å3 |
| Hydrophobicity | 0.863 |
| Hydrophilicity | 1.008 |
| Buriedness | 0.806 |
| Don/acc character | 2.965 |
| SiteScore | 0.948 |
| D Score | 0.735 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1539 |
| Chain | VB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/2: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |