Complex 9ljv
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.25 |
| System mass | 64.02 kDa |
| Deposition year | 2025 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9ljv |
| Reference | Wang De-Ping, Zhao Rong, Hu Wen-Shu, Li Hai-Ning, Cao Ji-Min, Zhou Xin, Xiang Ye. 2025. Structural insights into polymerase-catalyzed FAD capping of hepatitis C virus RNA Nature Communications |
| Equivalence Class |
NR_all_68723.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | C5P |
| Residue | . / 601 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 617.06 Å3 |
| Hydrophobicity | 0.349 |
| Hydrophilicity | 1.355 |
| Buriedness | 0.837 |
| Don/acc character | 0.418 |
| SiteScore | 1.093 |
| D Score | 1.000 |
| Kd | — |
| Compound | FAD |
| Residue | . / 601 |
| Chain | F / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 508.33 Å3 |
| Hydrophobicity | 0.890 |
| Hydrophilicity | 0.788 |
| Buriedness | 0.752 |
| Don/acc character | 1.088 |
| SiteScore | 1.051 |
| D Score | 1.091 |
| Kd | — |