HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7e

System information

Experimental technique Electron Microscopy
Experimental resolution 2.59
System mass 3887.59 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7e
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain KI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 353.98 Å3
Hydrophobicity 0.501
Hydrophilicity 1.088
Buriedness 0.679
Don/acc character 1.388
SiteScore 1.137
D Score 0.992

Compound SPM
Residue . / 5263
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5264
Chain PI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain SI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 761.46 Å3
Hydrophobicity 0.096
Hydrophilicity 1.881
Buriedness 0.848
Don/acc character 0.995
SiteScore 1.100
D Score 0.836

Compound SPM
Residue . / 5289
Chain OJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 271.66 Å3
Hydrophobicity 0.142
Hydrophilicity 1.456
Buriedness 0.826
Don/acc character 0.915
SiteScore 0.774
D Score 0.561

Compound SPM
Residue . / 5292
Chain RJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 1008.08 Å3
Hydrophobicity 0.144
Hydrophilicity 1.616
Buriedness 0.818
Don/acc character 0.979
SiteScore 1.081
D Score 0.904

Compound SPM
Residue . / 5293
Chain SJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 607.80 Å3
Hydrophobicity 0.200
Hydrophilicity 1.194
Buriedness 0.781
Don/acc character 1.122
SiteScore 1.048
D Score 1.010