Complex 9e7f
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.53 |
| System mass | 2631.37 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Pyrobaculum |
| RCSB PDB Entry | 9e7f |
| Reference | Nissley Amos J., Shulgina Yekaterina, Kivimae Roan W., Downing Blake E., Penev Petar I., Banfield Jillian F., Nayak Dipti D., Cate Jamie H. D.. . Structure of an archaeal ribosome reveals a divergent active site and hibernation factor Nature Microbiology |
| Equivalence Class |
NR_all_42177.3,
NR_all_26765.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 3101 |
| Chain | SB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 318.65 Å3 |
| Hydrophobicity | 0.134 |
| Hydrophilicity | 1.514 |
| Buriedness | 0.662 |
| Don/acc character | 1.082 |
| SiteScore | 1.126 |
| D Score | 0.843 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3102 |
| Chain | TB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 243.19 Å3 |
| Hydrophobicity | 0.246 |
| Hydrophilicity | 1.158 |
| Buriedness | 0.685 |
| Don/acc character | 2.051 |
| SiteScore | 0.991 |
| D Score | 0.973 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3103 |
| Chain | UB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 1208.05 Å3 |
| Hydrophobicity | 0.057 |
| Hydrophilicity | 1.991 |
| Buriedness | 0.844 |
| Don/acc character | 0.760 |
| SiteScore | 1.098 |
| D Score | 0.798 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3104 |
| Chain | VB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 727.85 Å3 |
| Hydrophobicity | 0.331 |
| Hydrophilicity | 1.444 |
| Buriedness | 0.882 |
| Don/acc character | 1.008 |
| SiteScore | 1.123 |
| D Score | 0.998 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3105 |
| Chain | WB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 490.49 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.176 |
| Buriedness | 0.767 |
| Don/acc character | 1.581 |
| SiteScore | 1.196 |
| D Score | 1.017 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3107 |
| Chain | YB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 496.66 Å3 |
| Hydrophobicity | 0.223 |
| Hydrophilicity | 1.917 |
| Buriedness | 0.802 |
| Don/acc character | 0.822 |
| SiteScore | 1.062 |
| D Score | 0.787 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3108 |
| Chain | ZB / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 747.74 Å3 |
| Hydrophobicity | 0.167 |
| Hydrophilicity | 1.298 |
| Buriedness | 0.792 |
| Don/acc character | 1.759 |
| SiteScore | 1.063 |
| D Score | 0.992 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3109 |
| Chain | AC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 601.97 Å3 |
| Hydrophobicity | 0.039 |
| Hydrophilicity | 2.515 |
| Buriedness | 0.854 |
| Don/acc character | 0.808 |
| SiteScore | 1.086 |
| D Score | 0.609 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3110 |
| Chain | BC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 909.98 Å3 |
| Hydrophobicity | 0.089 |
| Hydrophilicity | 1.655 |
| Buriedness | 0.846 |
| Don/acc character | 1.069 |
| SiteScore | 1.249 |
| D Score | 0.908 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3111 |
| Chain | CC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 564.92 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 1.455 |
| Buriedness | 0.833 |
| Don/acc character | 1.962 |
| SiteScore | 1.240 |
| D Score | 0.966 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3112 |
| Chain | DC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 378.67 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 1.383 |
| Buriedness | 0.618 |
| Don/acc character | 1.911 |
| SiteScore | 1.097 |
| D Score | 0.860 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3113 |
| Chain | EC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 455.16 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.435 |
| Buriedness | 0.812 |
| Don/acc character | 1.409 |
| SiteScore | 0.872 |
| D Score | 0.697 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3114 |
| Chain | FC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 292.92 Å3 |
| Hydrophobicity | 0.145 |
| Hydrophilicity | 0.977 |
| Buriedness | 0.656 |
| Don/acc character | 3.899 |
| SiteScore | 0.958 |
| D Score | 0.982 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3015 |
| Chain | LK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 556.00 Å3 |
| Hydrophobicity | 0.295 |
| Hydrophilicity | 1.183 |
| Buriedness | 0.774 |
| Don/acc character | 1.872 |
| SiteScore | 1.201 |
| D Score | 1.019 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3115 |
| Chain | GC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 515.87 Å3 |
| Hydrophobicity | 0.303 |
| Hydrophilicity | 1.218 |
| Buriedness | 0.887 |
| Don/acc character | 0.905 |
| SiteScore | 1.115 |
| D Score | 1.061 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3116 |
| Chain | HC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 844.12 Å3 |
| Hydrophobicity | 0.490 |
| Hydrophilicity | 1.144 |
| Buriedness | 0.846 |
| Don/acc character | 2.528 |
| SiteScore | 1.249 |
| D Score | 1.075 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3117 |
| Chain | IC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 306.99 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 0.932 |
| Buriedness | 0.661 |
| Don/acc character | 2.055 |
| SiteScore | 1.009 |
| D Score | 0.857 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3118 |
| Chain | JC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | SPM |
| Residue | . / 3119 |
| Chain | KC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 180.08 Å3 |
| Hydrophobicity | 0.006 |
| Hydrophilicity | 1.271 |
| Buriedness | 0.627 |
| Don/acc character | 1.990 |
| SiteScore | 0.983 |
| D Score | 0.749 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3120 |
| Chain | LC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 355.69 Å3 |
| Hydrophobicity | 0.022 |
| Hydrophilicity | 1.106 |
| Buriedness | 0.693 |
| Don/acc character | 1.601 |
| SiteScore | 0.868 |
| D Score | 0.831 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3121 |
| Chain | MC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 389.99 Å3 |
| Hydrophobicity | 0.250 |
| Hydrophilicity | 1.181 |
| Buriedness | 0.707 |
| Don/acc character | 1.374 |
| SiteScore | 1.156 |
| D Score | 0.979 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3122 |
| Chain | NC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 703.84 Å3 |
| Hydrophobicity | 0.022 |
| Hydrophilicity | 1.725 |
| Buriedness | 0.782 |
| Don/acc character | 1.184 |
| SiteScore | 1.206 |
| D Score | 0.847 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3123 |
| Chain | OC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 577.96 Å3 |
| Hydrophobicity | 0.093 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.762 |
| Don/acc character | 1.333 |
| SiteScore | 1.193 |
| D Score | 0.948 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3124 |
| Chain | PC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 54.54 Å3 |
| Hydrophobicity | 0.012 |
| Hydrophilicity | 1.083 |
| Buriedness | 0.543 |
| Don/acc character | 3.204 |
| SiteScore | 0.588 |
| D Score | 0.324 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3125 |
| Chain | QC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 693.55 Å3 |
| Hydrophobicity | 0.127 |
| Hydrophilicity | 1.357 |
| Buriedness | 0.775 |
| Don/acc character | 1.447 |
| SiteScore | 1.201 |
| D Score | 0.963 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3126 |
| Chain | RC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 767.98 Å3 |
| Hydrophobicity | 0.029 |
| Hydrophilicity | 1.912 |
| Buriedness | 0.821 |
| Don/acc character | 1.216 |
| SiteScore | 0.696 |
| D Score | 0.809 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3127 |
| Chain | SC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 309.04 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.305 |
| Buriedness | 0.702 |
| Don/acc character | 2.787 |
| SiteScore | 1.029 |
| D Score | 0.777 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3128 |
| Chain | TC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 677.08 Å3 |
| Hydrophobicity | 0.164 |
| Hydrophilicity | 1.718 |
| Buriedness | 0.878 |
| Don/acc character | 1.046 |
| SiteScore | 1.121 |
| D Score | 0.907 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3129 |
| Chain | UC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 374.56 Å3 |
| Hydrophobicity | 0.302 |
| Hydrophilicity | 1.279 |
| Buriedness | 0.655 |
| Don/acc character | 1.697 |
| SiteScore | 1.121 |
| D Score | 0.916 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3130 |
| Chain | VC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 757.34 Å3 |
| Hydrophobicity | 0.065 |
| Hydrophilicity | 1.300 |
| Buriedness | 0.783 |
| Don/acc character | 1.276 |
| SiteScore | 1.057 |
| D Score | 0.986 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3131 |
| Chain | WC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 309.04 Å3 |
| Hydrophobicity | 0.064 |
| Hydrophilicity | 1.120 |
| Buriedness | 0.595 |
| Don/acc character | 3.384 |
| SiteScore | 0.837 |
| D Score | 0.811 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3132 |
| Chain | XC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 921.30 Å3 |
| Hydrophobicity | 0.238 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.832 |
| Don/acc character | 1.222 |
| SiteScore | 1.240 |
| D Score | 0.990 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3133 |
| Chain | YC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 719.27 Å3 |
| Hydrophobicity | 0.144 |
| Hydrophilicity | 1.130 |
| Buriedness | 0.695 |
| Don/acc character | 1.251 |
| SiteScore | 1.148 |
| D Score | 0.989 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3134 |
| Chain | ZC / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 547.77 Å3 |
| Hydrophobicity | 0.211 |
| Hydrophilicity | 1.518 |
| Buriedness | 0.821 |
| Don/acc character | 2.538 |
| SiteScore | 0.980 |
| D Score | 0.806 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3135 |
| Chain | AD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 686.34 Å3 |
| Hydrophobicity | 0.219 |
| Hydrophilicity | 1.376 |
| Buriedness | 0.828 |
| Don/acc character | 1.524 |
| SiteScore | 1.237 |
| D Score | 0.989 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3136 |
| Chain | BD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 513.47 Å3 |
| Hydrophobicity | 0.128 |
| Hydrophilicity | 1.581 |
| Buriedness | 0.744 |
| Don/acc character | 1.262 |
| SiteScore | 1.181 |
| D Score | 0.871 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3137 |
| Chain | CD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 707.61 Å3 |
| Hydrophobicity | 0.008 |
| Hydrophilicity | 1.783 |
| Buriedness | 0.752 |
| Don/acc character | 1.258 |
| SiteScore | 1.186 |
| D Score | 0.810 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3138 |
| Chain | DD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 540.91 Å3 |
| Hydrophobicity | 0.147 |
| Hydrophilicity | 1.433 |
| Buriedness | 0.799 |
| Don/acc character | 1.296 |
| SiteScore | 1.218 |
| D Score | 0.952 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3139 |
| Chain | ED / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 602.31 Å3 |
| Hydrophobicity | 0.233 |
| Hydrophilicity | 1.195 |
| Buriedness | 0.805 |
| Don/acc character | 1.959 |
| SiteScore | 1.199 |
| D Score | 1.004 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3140 |
| Chain | FD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 232.90 Å3 |
| Hydrophobicity | 0.011 |
| Hydrophilicity | 1.111 |
| Buriedness | 0.673 |
| Don/acc character | 2.065 |
| SiteScore | 0.892 |
| D Score | 0.672 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3141 |
| Chain | GD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 189.68 Å3 |
| Hydrophobicity | 0.087 |
| Hydrophilicity | 0.973 |
| Buriedness | 0.613 |
| Don/acc character | 2.669 |
| SiteScore | 0.987 |
| D Score | 0.837 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3142 |
| Chain | HD / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 166.36 Å3 |
| Hydrophobicity | 0.139 |
| Hydrophilicity | 0.893 |
| Buriedness | 0.536 |
| Don/acc character | 2.000 |
| SiteScore | 0.813 |
| D Score | 0.834 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3143 |
| Chain | ID / 1 |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 797.82 Å3 |
| Hydrophobicity | 0.488 |
| Hydrophilicity | 1.298 |
| Buriedness | 0.828 |
| Don/acc character | 1.579 |
| SiteScore | 1.087 |
| D Score | 1.014 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3001 |
| Chain | XJ / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 436.30 Å3 |
| Hydrophobicity | 0.025 |
| Hydrophilicity | 1.694 |
| Buriedness | 0.870 |
| Don/acc character | 0.744 |
| SiteScore | 1.246 |
| D Score | 0.886 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3002 |
| Chain | YJ / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 739.85 Å3 |
| Hydrophobicity | 0.211 |
| Hydrophilicity | 1.123 |
| Buriedness | 0.803 |
| Don/acc character | 1.912 |
| SiteScore | 1.220 |
| D Score | 1.056 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3003 |
| Chain | ZJ / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 794.05 Å3 |
| Hydrophobicity | 0.111 |
| Hydrophilicity | 1.347 |
| Buriedness | 0.836 |
| Don/acc character | 2.033 |
| SiteScore | 1.242 |
| D Score | 1.002 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3004 |
| Chain | AK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | SPM |
| Residue | . / 3005 |
| Chain | BK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 351.58 Å3 |
| Hydrophobicity | 0.112 |
| Hydrophilicity | 1.093 |
| Buriedness | 0.804 |
| Don/acc character | 1.652 |
| SiteScore | 0.862 |
| D Score | 0.606 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3006 |
| Chain | CK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 290.18 Å3 |
| Hydrophobicity | 0.096 |
| Hydrophilicity | 1.267 |
| Buriedness | 0.752 |
| Don/acc character | 1.472 |
| SiteScore | 1.137 |
| D Score | 0.915 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3007 |
| Chain | DK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 159.50 Å3 |
| Hydrophobicity | 0.292 |
| Hydrophilicity | 0.796 |
| Buriedness | 0.690 |
| Don/acc character | 3.528 |
| SiteScore | 0.956 |
| D Score | 0.792 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3008 |
| Chain | EK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 181.10 Å3 |
| Hydrophobicity | 0.096 |
| Hydrophilicity | 1.415 |
| Buriedness | 0.806 |
| Don/acc character | 3.852 |
| SiteScore | 0.709 |
| D Score | 0.304 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3009 |
| Chain | FK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 314.53 Å3 |
| Hydrophobicity | 0.129 |
| Hydrophilicity | 1.343 |
| Buriedness | 0.799 |
| Don/acc character | 1.435 |
| SiteScore | 1.052 |
| D Score | 0.770 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3010 |
| Chain | GK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 690.80 Å3 |
| Hydrophobicity | 0.067 |
| Hydrophilicity | 1.555 |
| Buriedness | 0.863 |
| Don/acc character | 1.462 |
| SiteScore | 1.261 |
| D Score | 0.951 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3011 |
| Chain | HK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 178.36 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 0.937 |
| Buriedness | 0.679 |
| Don/acc character | 2.661 |
| SiteScore | 0.752 |
| D Score | 0.522 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3012 |
| Chain | IK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 577.96 Å3 |
| Hydrophobicity | 0.343 |
| Hydrophilicity | 1.133 |
| Buriedness | 0.799 |
| Don/acc character | 1.851 |
| SiteScore | 1.218 |
| D Score | 1.050 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3013 |
| Chain | JK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 366.32 Å3 |
| Hydrophobicity | 0.145 |
| Hydrophilicity | 1.195 |
| Buriedness | 0.818 |
| Don/acc character | 1.070 |
| SiteScore | 0.906 |
| D Score | 0.625 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3014 |
| Chain | KK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 365.30 Å3 |
| Hydrophobicity | 0.010 |
| Hydrophilicity | 1.489 |
| Buriedness | 0.852 |
| Don/acc character | 1.503 |
| SiteScore | 0.829 |
| D Score | 0.620 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3016 |
| Chain | MK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 888.37 Å3 |
| Hydrophobicity | 0.416 |
| Hydrophilicity | 1.223 |
| Buriedness | 0.860 |
| Don/acc character | 1.419 |
| SiteScore | 1.258 |
| D Score | 1.057 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3017 |
| Chain | NK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 301.84 Å3 |
| Hydrophobicity | 0.058 |
| Hydrophilicity | 1.079 |
| Buriedness | 0.644 |
| Don/acc character | 1.407 |
| SiteScore | 1.016 |
| D Score | 0.849 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3018 |
| Chain | OK / 4 |
| Non-redundant | True |
| Interacting RNA chains | D/4 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/4: rRNA |
| RNA family global | rRNA |
| Volume | 446.24 Å3 |
| Hydrophobicity | 0.296 |
| Hydrophilicity | 1.115 |
| Buriedness | 0.800 |
| Don/acc character | 2.626 |
| SiteScore | 1.218 |
| D Score | 1.056 |
| Kd | — |
| Compound | SPM |
| Residue | . / 201 |
| Chain | PN / AL |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 159.84 Å3 |
| Hydrophobicity | 0.581 |
| Hydrophilicity | 0.846 |
| Buriedness | 0.701 |
| Don/acc character | 1.136 |
| SiteScore | 0.715 |
| D Score | 0.668 |
| Kd | — |
| Compound | SPM |
| Residue | . / 201 |
| Chain | SN / AM |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 260.68 Å3 |
| Hydrophobicity | 0.331 |
| Hydrophilicity | 0.965 |
| Buriedness | 0.704 |
| Don/acc character | 3.198 |
| SiteScore | 0.925 |
| D Score | 0.927 |
| Kd | — |
| Compound | SPM |
| Residue | . / 101 |
| Chain | WN / Ah |
| Non-redundant | True |
| Interacting RNA chains | C/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | C/1: rRNA |
| RNA family global | rRNA |
| Volume | 296.01 Å3 |
| Hydrophobicity | 0.176 |
| Hydrophilicity | 1.282 |
| Buriedness | 0.810 |
| Don/acc character | 1.738 |
| SiteScore | 0.794 |
| D Score | 0.648 |
| Kd | — |