HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9i9w

System information

Experimental technique X-ray
Experimental resolution 1.50
System mass 10.59 kDa
Deposition year 2025
Molecule type RNA
# RNA entities 1
Organism Homo
RCSB PDB Entry 9i9w
Reference Mateja-Pluta Martyna, Błaszczyk Leszek, Bejger Magdalena, Nakatani Kazuhiko, Kiliszek Agnieszka. . Naphthyridine carbamate dimer ligand induces formation of Z-RNA-like fold of disease-related RNA and exhibits a molecular glue characteristics in crystal lattice formation Nucleic Acids Research
Equivalence Class NR_all_66671.1
BGSU version: 4.48

Compound B2R
Residue . / 101
Chain C / AAA
Non-redundant True
Interacting RNA chains B/BBB, A/AAA
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/AAA: unknown, B/BBB: unknown
RNA family global unknown
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound B2R
Residue . / 102
Chain D / AAA
Non-redundant True
Interacting RNA chains B/BBB, A/AAA
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/AAA: unknown, B/BBB: unknown
RNA family global unknown
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound B2R
Residue . / 101
Chain E / BBB
Non-redundant False
Interacting RNA chains B/BBB, A/AAA
RNA environment detailled other
RNA environment global RNA/Other
RNA family chains A/AAA: unknown, B/BBB: unknown
RNA family global unknown
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd