HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p6z

System information

Experimental technique Electron Microscopy
Experimental resolution 2.97
System mass 3251.31 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p6z
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain II / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 351.58 Å3
Hydrophobicity 0.297
Hydrophilicity 0.981
Buriedness 0.663
Don/acc character 1.210
SiteScore 1.138
D Score 1.018

Compound SPM
Residue . / 5263
Chain MI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 134.80 Å3
Hydrophobicity 0.088
Hydrophilicity 0.978
Buriedness 0.558
Don/acc character 1.590
SiteScore 0.859
D Score 0.687

Compound SPM
Residue . / 5264
Chain NI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain QI / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 778.27 Å3
Hydrophobicity 0.071
Hydrophilicity 1.950
Buriedness 0.851
Don/acc character 0.974
SiteScore 1.103
D Score 0.815

Compound SPM
Residue . / 5289
Chain MJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 366.32 Å3
Hydrophobicity 0.079
Hydrophilicity 1.748
Buriedness 0.807
Don/acc character 0.716
SiteScore 0.820
D Score 0.531

Compound SPM
Residue . / 5292
Chain PJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 1065.02 Å3
Hydrophobicity 0.161
Hydrophilicity 1.595
Buriedness 0.821
Don/acc character 0.992
SiteScore 1.082
D Score 0.913

Compound SPM
Residue . / 5294
Chain RJ / L5
Non-redundant True
Interacting RNA chains B/L5
Volume 669.88 Å3
Hydrophobicity 0.140
Hydrophilicity 1.271
Buriedness 0.777
Don/acc character 1.332
SiteScore 1.053
D Score 0.992