Complex 9fsf
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.80 |
| System mass | 1007.99 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fsf |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1501 |
| Chain | JA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 773.12 Å3 |
| Hydrophobicity | 0.309 |
| Hydrophilicity | 1.273 |
| Buriedness | 0.865 |
| Don/acc character | 1.706 |
| SiteScore | 1.111 |
| D Score | 1.044 |
| Compound | SPM |
| Residue | . / 1502 |
| Chain | KA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 505.24 Å3 |
| Hydrophobicity | 0.216 |
| Hydrophilicity | 1.240 |
| Buriedness | 0.822 |
| Don/acc character | 2.278 |
| SiteScore | 1.062 |
| D Score | 0.767 |
| Compound | SPM |
| Residue | . / 1503 |
| Chain | LA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 613.97 Å3 |
| Hydrophobicity | 0.083 |
| Hydrophilicity | 1.261 |
| Buriedness | 0.752 |
| Don/acc character | 1.457 |
| SiteScore | 1.186 |
| D Score | 0.980 |
| Compound | SPM |
| Residue | . / 1504 |
| Chain | MA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 290.18 Å3 |
| Hydrophobicity | 0.270 |
| Hydrophilicity | 1.486 |
| Buriedness | 0.875 |
| Don/acc character | 0.868 |
| SiteScore | 0.882 |
| D Score | 0.678 |
| Compound | SPM |
| Residue | . / 1505 |
| Chain | NA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 536.80 Å3 |
| Hydrophobicity | 0.187 |
| Hydrophilicity | 1.079 |
| Buriedness | 0.826 |
| Don/acc character | 2.277 |
| SiteScore | 0.959 |
| D Score | 0.969 |
| Compound | SPM |
| Residue | . / 1506 |
| Chain | OA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 727.50 Å3 |
| Hydrophobicity | 0.388 |
| Hydrophilicity | 1.269 |
| Buriedness | 0.827 |
| Don/acc character | 1.329 |
| SiteScore | 1.086 |
| D Score | 1.022 |
| Compound | SPM |
| Residue | . / 1507 |
| Chain | PA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 694.58 Å3 |
| Hydrophobicity | 0.187 |
| Hydrophilicity | 1.420 |
| Buriedness | 0.884 |
| Don/acc character | 1.630 |
| SiteScore | 1.124 |
| D Score | 1.007 |
| Compound | SPM |
| Residue | . / 1508 |
| Chain | QA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 307.67 Å3 |
| Hydrophobicity | 0.056 |
| Hydrophilicity | 1.247 |
| Buriedness | 0.827 |
| Don/acc character | 1.604 |
| SiteScore | 0.937 |
| D Score | 0.646 |
| Compound | SPM |
| Residue | . / 1509 |
| Chain | RA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 767.98 Å3 |
| Hydrophobicity | 0.257 |
| Hydrophilicity | 1.297 |
| Buriedness | 0.844 |
| Don/acc character | 1.957 |
| SiteScore | 1.247 |
| D Score | 1.023 |
| Compound | SPM |
| Residue | . / 1510 |
| Chain | SA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 607.11 Å3 |
| Hydrophobicity | 0.126 |
| Hydrophilicity | 0.964 |
| Buriedness | 0.734 |
| Don/acc character | 2.240 |
| SiteScore | 0.924 |
| D Score | 0.918 |
| Compound | SPM |
| Residue | . / 1511 |
| Chain | TA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 589.27 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.229 |
| Buriedness | 0.778 |
| Don/acc character | 1.633 |
| SiteScore | 1.204 |
| D Score | 1.006 |
| Compound | SPM |
| Residue | . / 1512 |
| Chain | UA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 761.12 Å3 |
| Hydrophobicity | 0.076 |
| Hydrophilicity | 1.357 |
| Buriedness | 0.826 |
| Don/acc character | 1.666 |
| SiteScore | 1.235 |
| D Score | 0.993 |
| Compound | SPM |
| Residue | . / 1513 |
| Chain | VA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 324.48 Å3 |
| Hydrophobicity | 0.162 |
| Hydrophilicity | 0.997 |
| Buriedness | 0.654 |
| Don/acc character | 2.431 |
| SiteScore | 0.877 |
| D Score | 0.876 |
| Compound | SPM |
| Residue | . / 1514 |
| Chain | WA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 693.20 Å3 |
| Hydrophobicity | 0.056 |
| Hydrophilicity | 1.517 |
| Buriedness | 0.821 |
| Don/acc character | 1.730 |
| SiteScore | 1.233 |
| D Score | 0.938 |
| Compound | SPM |
| Residue | . / 1515 |
| Chain | XA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 467.51 Å3 |
| Hydrophobicity | 0.078 |
| Hydrophilicity | 1.355 |
| Buriedness | 0.843 |
| Don/acc character | 1.547 |
| SiteScore | 1.247 |
| D Score | 1.004 |
| Compound | SPM |
| Residue | . / 1516 |
| Chain | YA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 446.93 Å3 |
| Hydrophobicity | 0.315 |
| Hydrophilicity | 1.378 |
| Buriedness | 0.888 |
| Don/acc character | 1.293 |
| SiteScore | 1.042 |
| D Score | 0.914 |
| Compound | SPM |
| Residue | . / 1517 |
| Chain | ZA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 198.94 Å3 |
| Hydrophobicity | 0.051 |
| Hydrophilicity | 1.134 |
| Buriedness | 0.649 |
| Don/acc character | 3.534 |
| SiteScore | 0.942 |
| D Score | 0.735 |
| Compound | SPM |
| Residue | . / 1518 |
| Chain | AB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 771.06 Å3 |
| Hydrophobicity | 0.047 |
| Hydrophilicity | 1.389 |
| Buriedness | 0.761 |
| Don/acc character | 1.538 |
| SiteScore | 1.192 |
| D Score | 0.944 |
| Compound | SPM |
| Residue | . / 1519 |
| Chain | BB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 773.81 Å3 |
| Hydrophobicity | 0.252 |
| Hydrophilicity | 0.977 |
| Buriedness | 0.741 |
| Don/acc character | 1.294 |
| SiteScore | 1.041 |
| D Score | 1.066 |
| Compound | SPM |
| Residue | . / 1520 |
| Chain | CB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 293.27 Å3 |
| Hydrophobicity | 0.292 |
| Hydrophilicity | 1.346 |
| Buriedness | 0.845 |
| Don/acc character | 2.361 |
| SiteScore | 0.914 |
| D Score | 0.772 |
| Compound | SPM |
| Residue | . / 1522 |
| Chain | EB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 397.19 Å3 |
| Hydrophobicity | 0.138 |
| Hydrophilicity | 1.135 |
| Buriedness | 0.697 |
| Don/acc character | 2.528 |
| SiteScore | 0.999 |
| D Score | 0.988 |
| Compound | SPM |
| Residue | . / 1523 |
| Chain | FB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 627.00 Å3 |
| Hydrophobicity | 0.151 |
| Hydrophilicity | 1.364 |
| Buriedness | 0.745 |
| Don/acc character | 1.094 |
| SiteScore | 1.031 |
| D Score | 0.942 |
| Compound | SPM |
| Residue | . / 1524 |
| Chain | GB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 451.05 Å3 |
| Hydrophobicity | 0.232 |
| Hydrophilicity | 1.237 |
| Buriedness | 0.828 |
| Don/acc character | 2.003 |
| SiteScore | 1.237 |
| D Score | 1.034 |
| Compound | SPM |
| Residue | . / 1525 |
| Chain | HB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 472.31 Å3 |
| Hydrophobicity | 0.153 |
| Hydrophilicity | 1.056 |
| Buriedness | 0.682 |
| Don/acc character | 1.916 |
| SiteScore | 1.109 |
| D Score | 0.966 |
| Compound | SPM |
| Residue | . / 1526 |
| Chain | IB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 423.61 Å3 |
| Hydrophobicity | 0.060 |
| Hydrophilicity | 1.372 |
| Buriedness | 0.778 |
| Don/acc character | 1.202 |
| SiteScore | 1.203 |
| D Score | 0.959 |
| Compound | SPM |
| Residue | . / 1527 |
| Chain | JB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 470.60 Å3 |
| Hydrophobicity | 0.074 |
| Hydrophilicity | 1.516 |
| Buriedness | 0.803 |
| Don/acc character | 1.455 |
| SiteScore | 1.220 |
| D Score | 0.928 |
| Compound | SPM |
| Residue | . / 1528 |
| Chain | KB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 589.96 Å3 |
| Hydrophobicity | 0.102 |
| Hydrophilicity | 1.452 |
| Buriedness | 0.838 |
| Don/acc character | 1.067 |
| SiteScore | 1.141 |
| D Score | 0.838 |
| Compound | SPM |
| Residue | . / 1529 |
| Chain | LB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 106.33 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.189 |
| Buriedness | 0.613 |
| Don/acc character | 2.478 |
| SiteScore | 0.719 |
| D Score | 0.440 |
| Compound | SPM |
| Residue | . / 1530 |
| Chain | MB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 491.52 Å3 |
| Hydrophobicity | 0.137 |
| Hydrophilicity | 1.436 |
| Buriedness | 0.849 |
| Don/acc character | 1.094 |
| SiteScore | 1.101 |
| D Score | 0.981 |
| Compound | SPM |
| Residue | . / 1531 |
| Chain | NB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 245.59 Å3 |
| Hydrophobicity | 0.291 |
| Hydrophilicity | 1.416 |
| Buriedness | 0.847 |
| Don/acc character | 1.474 |
| SiteScore | 0.900 |
| D Score | 0.731 |
| Compound | SPM |
| Residue | . / 1532 |
| Chain | OB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 233.58 Å3 |
| Hydrophobicity | 0.227 |
| Hydrophilicity | 1.057 |
| Buriedness | 0.735 |
| Don/acc character | 3.463 |
| SiteScore | 0.830 |
| D Score | 0.594 |
| Compound | SPM |
| Residue | . / 1533 |
| Chain | PB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 98.10 Å3 |
| Hydrophobicity | 0.018 |
| Hydrophilicity | 0.941 |
| Buriedness | 0.633 |
| Don/acc character | 1.895 |
| SiteScore | 0.657 |
| D Score | 0.412 |
| Compound | SPM |
| Residue | . / 1534 |
| Chain | QB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 192.08 Å3 |
| Hydrophobicity | 0.172 |
| Hydrophilicity | 1.321 |
| Buriedness | 0.687 |
| Don/acc character | 1.159 |
| SiteScore | 1.000 |
| D Score | 0.739 |
| Compound | SPM |
| Residue | . / 1535 |
| Chain | RB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 763.52 Å3 |
| Hydrophobicity | 0.082 |
| Hydrophilicity | 1.109 |
| Buriedness | 0.712 |
| Don/acc character | 1.707 |
| SiteScore | 1.159 |
| D Score | 1.006 |
| Compound | SPM |
| Residue | . / 1536 |
| Chain | SB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 455.16 Å3 |
| Hydrophobicity | 0.460 |
| Hydrophilicity | 1.332 |
| Buriedness | 0.869 |
| Don/acc character | 0.964 |
| SiteScore | 1.114 |
| D Score | 1.027 |
| Compound | SPM |
| Residue | . / 1537 |
| Chain | TB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | SPM |
| Residue | . / 1538 |
| Chain | UB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 380.04 Å3 |
| Hydrophobicity | 0.257 |
| Hydrophilicity | 1.272 |
| Buriedness | 0.849 |
| Don/acc character | 1.558 |
| SiteScore | 0.933 |
| D Score | 0.627 |
| Compound | SPM |
| Residue | . / 1539 |
| Chain | VB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 403.03 Å3 |
| Hydrophobicity | 0.126 |
| Hydrophilicity | 1.151 |
| Buriedness | 0.712 |
| Don/acc character | 2.393 |
| SiteScore | 1.159 |
| D Score | 0.992 |
| Compound | SPM |
| Residue | . / 1540 |
| Chain | WB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 604.71 Å3 |
| Hydrophobicity | 0.191 |
| Hydrophilicity | 1.139 |
| Buriedness | 0.825 |
| Don/acc character | 3.449 |
| SiteScore | 1.213 |
| D Score | 1.035 |
| Compound | SPM |
| Residue | . / 1542 |
| Chain | YB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 627.35 Å3 |
| Hydrophobicity | 0.064 |
| Hydrophilicity | 1.500 |
| Buriedness | 0.881 |
| Don/acc character | 1.255 |
| SiteScore | 1.089 |
| D Score | 0.936 |
| Compound | SPM |
| Residue | . / 1543 |
| Chain | ZB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 202.37 Å3 |
| Hydrophobicity | 0.612 |
| Hydrophilicity | 1.001 |
| Buriedness | 0.717 |
| Don/acc character | 2.779 |
| SiteScore | 0.976 |
| D Score | 0.795 |
| Compound | SPM |
| Residue | . / 1544 |
| Chain | AC / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 227.07 Å3 |
| Hydrophobicity | 0.221 |
| Hydrophilicity | 0.893 |
| Buriedness | 0.622 |
| Don/acc character | 2.911 |
| SiteScore | 1.021 |
| D Score | 0.885 |