HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p7a

System information

Experimental technique Electron Microscopy
Experimental resolution 2.81
System mass 3868.94 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p7a
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5259
Chain KI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 334.43 Å3
Hydrophobicity 0.464
Hydrophilicity 0.956
Buriedness 0.691
Don/acc character 1.500
SiteScore 1.162
D Score 1.043

Compound SPM
Residue . / 5263
Chain OI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 113.88 Å3
Hydrophobicity 0.188
Hydrophilicity 1.251
Buriedness 0.610
Don/acc character 1.398
SiteScore 0.779
D Score 0.498

Compound SPM
Residue . / 5264
Chain PI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain SI / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 742.94 Å3
Hydrophobicity 0.111
Hydrophilicity 1.916
Buriedness 0.853
Don/acc character 0.904
SiteScore 1.103
D Score 0.827

Compound SPM
Residue . / 5289
Chain OJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 380.04 Å3
Hydrophobicity 0.127
Hydrophilicity 1.810
Buriedness 0.833
Don/acc character 0.819
SiteScore 0.854
D Score 0.547

Compound SPM
Residue . / 5292
Chain RJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 969.32 Å3
Hydrophobicity 0.100
Hydrophilicity 1.604
Buriedness 0.818
Don/acc character 0.912
SiteScore 1.080
D Score 0.908

Compound SPM
Residue . / 5294
Chain TJ / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 650.67 Å3
Hydrophobicity 0.209
Hydrophilicity 1.280
Buriedness 0.786
Don/acc character 1.250
SiteScore 1.059
D Score 0.995