HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 9p76

System information

Experimental technique Electron Microscopy
Experimental resolution 2.83
System mass 3304.79 kDa
Deposition year 2025
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 9p76
Reference Zheng Wei, Zhang Yuekang, Wang Jimin, Wang Shuhui, Chai Pengxin, Bailey Elizabeth J., Zhu Chenghao, Guo Wangbiao, Devarkar Swapnil C., Wu Shenping, Lin Jianfeng, Zhang Kai, Liu Jun, Lomakin Ivan B., Xiong Yong. . Visualizing the translation landscape in human cells at high resolution Nature Communications

Compound SPM
Residue . / 5258
Chain II / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 432.87 Å3
Hydrophobicity 0.332
Hydrophilicity 0.996
Buriedness 0.652
Don/acc character 1.702
SiteScore 0.978
D Score 1.006

Compound SPM
Residue . / 5263
Chain NI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 96.04 Å3
Hydrophobicity 0.019
Hydrophilicity 1.238
Buriedness 0.591
Don/acc character 1.313
SiteScore 0.760
D Score 0.483

Compound SPM
Residue . / 5264
Chain OI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 5267
Chain RI / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 753.23 Å3
Hydrophobicity 0.140
Hydrophilicity 1.940
Buriedness 0.848
Don/acc character 1.193
SiteScore 1.100
D Score 0.816

Compound SPM
Residue . / 5288
Chain MJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 287.78 Å3
Hydrophobicity 0.027
Hydrophilicity 1.672
Buriedness 0.820
Don/acc character 0.870
SiteScore 0.676
D Score 0.367

Compound SPM
Residue . / 5291
Chain PJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 1104.80 Å3
Hydrophobicity 0.111
Hydrophilicity 1.567
Buriedness 0.809
Don/acc character 1.077
SiteScore 1.074
D Score 0.914

Compound SPM
Residue . / 5292
Chain QJ / L5
Non-redundant True
Interacting RNA chains E/L5
Volume 635.58 Å3
Hydrophobicity 0.227
Hydrophilicity 1.206
Buriedness 0.783
Don/acc character 1.511
SiteScore 1.057
D Score 1.016