Complex 9fy0
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 1013.35 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Escherichia |
| RCSB PDB Entry | 9fy0 |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1503 |
| Chain | LA / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 638.67 Å3 |
| Hydrophobicity | 0.073 |
| Hydrophilicity | 1.329 |
| Buriedness | 0.726 |
| Don/acc character | 2.379 |
| SiteScore | 1.019 |
| D Score | 0.943 |
| Compound | SPM |
| Residue | . / 1508 |
| Chain | QA / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 1257.09 Å3 |
| Hydrophobicity | 0.130 |
| Hydrophilicity | 1.177 |
| Buriedness | 0.784 |
| Don/acc character | 2.223 |
| SiteScore | 1.058 |
| D Score | 1.027 |
| Compound | SPM |
| Residue | . / 1513 |
| Chain | VA / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 938.45 Å3 |
| Hydrophobicity | 0.049 |
| Hydrophilicity | 1.577 |
| Buriedness | 0.796 |
| Don/acc character | 1.456 |
| SiteScore | 1.065 |
| D Score | 0.903 |
| Compound | SPM |
| Residue | . / 1516 |
| Chain | YA / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 437.67 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 1.530 |
| Buriedness | 0.768 |
| Don/acc character | 1.500 |
| SiteScore | 1.047 |
| D Score | 0.902 |
| Compound | SPM |
| Residue | . / 1517 |
| Chain | ZA / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 929.19 Å3 |
| Hydrophobicity | 0.051 |
| Hydrophilicity | 1.422 |
| Buriedness | 0.791 |
| Don/acc character | 1.395 |
| SiteScore | 1.062 |
| D Score | 0.951 |
| Compound | SPM |
| Residue | . / 1520 |
| Chain | CB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 315.56 Å3 |
| Hydrophobicity | 0.031 |
| Hydrophilicity | 1.337 |
| Buriedness | 0.718 |
| Don/acc character | 1.907 |
| SiteScore | 1.014 |
| D Score | 0.935 |
| Compound | SPM |
| Residue | . / 1527 |
| Chain | JB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 192.08 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.272 |
| Buriedness | 0.645 |
| Don/acc character | 2.275 |
| SiteScore | 0.723 |
| D Score | 0.603 |
| Compound | SPM |
| Residue | . / 1529 |
| Chain | LB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 35.67 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 2.309 |
| Buriedness | 0.957 |
| Don/acc character | 0.548 |
| SiteScore | 0.743 |
| D Score | 0.209 |
| Compound | SPM |
| Residue | . / 1531 |
| Chain | NB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 287.43 Å3 |
| Hydrophobicity | 0.155 |
| Hydrophilicity | 1.041 |
| Buriedness | 0.668 |
| Don/acc character | 2.616 |
| SiteScore | 0.919 |
| D Score | 0.923 |
| Compound | SPM |
| Residue | . / 1532 |
| Chain | OB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 51.79 Å3 |
| Hydrophobicity | 0.709 |
| Hydrophilicity | 0.721 |
| Buriedness | 0.602 |
| Don/acc character | 1.526 |
| SiteScore | 0.584 |
| D Score | 0.536 |
| Compound | SPM |
| Residue | . / 1533 |
| Chain | PB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 204.08 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 1.358 |
| Buriedness | 0.685 |
| Don/acc character | 1.576 |
| SiteScore | 0.889 |
| D Score | 0.777 |
| Compound | SPM |
| Residue | . / 1534 |
| Chain | QB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 1069.13 Å3 |
| Hydrophobicity | 0.070 |
| Hydrophilicity | 1.296 |
| Buriedness | 0.739 |
| Don/acc character | 1.692 |
| SiteScore | 1.027 |
| D Score | 0.961 |
| Compound | SPM |
| Residue | . / 1538 |
| Chain | UB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 316.59 Å3 |
| Hydrophobicity | 0.030 |
| Hydrophilicity | 1.196 |
| Buriedness | 0.657 |
| Don/acc character | 4.909 |
| SiteScore | 0.973 |
| D Score | 0.945 |
| Compound | SPM |
| Residue | . / 1539 |
| Chain | VB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 1202.90 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 1.269 |
| Buriedness | 0.752 |
| Don/acc character | 2.183 |
| SiteScore | 1.036 |
| D Score | 0.977 |
| Compound | SPM |
| Residue | . / 1541 |
| Chain | XB / 2 |
| Non-redundant | False |
| Interacting RNA chains | A/2 |
| Volume | 119.71 Å3 |
| Hydrophobicity | 0.767 |
| Hydrophilicity | 1.033 |
| Buriedness | 0.740 |
| Don/acc character | 2.950 |
| SiteScore | 0.825 |
| D Score | 0.785 |
| Compound | SPM |
| Residue | . / 1542 |
| Chain | YB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 572.81 Å3 |
| Hydrophobicity | 0.064 |
| Hydrophilicity | 1.152 |
| Buriedness | 0.754 |
| Don/acc character | 1.659 |
| SiteScore | 1.037 |
| D Score | 1.017 |