Complex 9fy0
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 1013.35 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharolobus |
| RCSB PDB Entry | 9fy0 |
| Reference | Bourgeois Gabrielle, Coureux Pierre-Damien, Lazennec-Schurdevin Christine, Madru Clément, Gaillard Thomas, Duchateau Magalie, Chamot-Rooke Julia, Bourcier Sophie, Mechulam Yves, Schmitt Emmanuelle. . Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity Nature Communications |
| Compound | SPM |
| Residue | . / 1501 |
| Chain | JA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 764.55 Å3 |
| Hydrophobicity | 0.193 |
| Hydrophilicity | 1.473 |
| Buriedness | 0.892 |
| Don/acc character | 1.252 |
| SiteScore | 1.280 |
| D Score | 0.995 |
| Compound | SPM |
| Residue | . / 1502 |
| Chain | KA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 408.17 Å3 |
| Hydrophobicity | 0.067 |
| Hydrophilicity | 1.510 |
| Buriedness | 0.827 |
| Don/acc character | 2.526 |
| SiteScore | 1.163 |
| D Score | 0.850 |
| Compound | SPM |
| Residue | . / 1503 |
| Chain | LA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 159.50 Å3 |
| Hydrophobicity | 0.041 |
| Hydrophilicity | 1.242 |
| Buriedness | 0.718 |
| Don/acc character | 4.633 |
| SiteScore | 0.662 |
| D Score | 0.414 |
| Compound | SPM |
| Residue | . / 1504 |
| Chain | MA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 491.52 Å3 |
| Hydrophobicity | 0.023 |
| Hydrophilicity | 1.531 |
| Buriedness | 0.819 |
| Don/acc character | 1.226 |
| SiteScore | 0.960 |
| D Score | 0.657 |
| Compound | SPM |
| Residue | . / 1505 |
| Chain | NA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 716.18 Å3 |
| Hydrophobicity | 0.093 |
| Hydrophilicity | 1.244 |
| Buriedness | 0.835 |
| Don/acc character | 1.984 |
| SiteScore | 1.241 |
| D Score | 1.035 |
| Compound | SPM |
| Residue | . / 1506 |
| Chain | OA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 798.85 Å3 |
| Hydrophobicity | 0.333 |
| Hydrophilicity | 1.193 |
| Buriedness | 0.790 |
| Don/acc character | 1.358 |
| SiteScore | 1.211 |
| D Score | 1.025 |
| Compound | SPM |
| Residue | . / 1507 |
| Chain | PA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 656.16 Å3 |
| Hydrophobicity | 0.198 |
| Hydrophilicity | 1.373 |
| Buriedness | 0.844 |
| Don/acc character | 1.540 |
| SiteScore | 1.248 |
| D Score | 0.999 |
| Compound | SPM |
| Residue | . / 1508 |
| Chain | QA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 272.34 Å3 |
| Hydrophobicity | 0.095 |
| Hydrophilicity | 1.252 |
| Buriedness | 0.798 |
| Don/acc character | 1.299 |
| SiteScore | 0.959 |
| D Score | 0.680 |
| Compound | SPM |
| Residue | . / 1509 |
| Chain | RA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 804.34 Å3 |
| Hydrophobicity | 0.199 |
| Hydrophilicity | 1.260 |
| Buriedness | 0.847 |
| Don/acc character | 2.236 |
| SiteScore | 1.250 |
| D Score | 1.038 |
| Compound | SPM |
| Residue | . / 1510 |
| Chain | SA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 704.18 Å3 |
| Hydrophobicity | 0.055 |
| Hydrophilicity | 1.095 |
| Buriedness | 0.737 |
| Don/acc character | 2.046 |
| SiteScore | 1.176 |
| D Score | 1.026 |
| Compound | SPM |
| Residue | . / 1511 |
| Chain | TA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 912.72 Å3 |
| Hydrophobicity | 0.072 |
| Hydrophilicity | 1.337 |
| Buriedness | 0.844 |
| Don/acc character | 1.864 |
| SiteScore | 1.247 |
| D Score | 1.010 |
| Compound | SPM |
| Residue | . / 1512 |
| Chain | UA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 309.04 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 0.983 |
| Buriedness | 0.652 |
| Don/acc character | 2.047 |
| SiteScore | 1.045 |
| D Score | 0.901 |
| Compound | SPM |
| Residue | . / 1513 |
| Chain | VA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 687.03 Å3 |
| Hydrophobicity | 0.029 |
| Hydrophilicity | 1.475 |
| Buriedness | 0.780 |
| Don/acc character | 1.385 |
| SiteScore | 1.205 |
| D Score | 0.927 |
| Compound | SPM |
| Residue | . / 1514 |
| Chain | WA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 420.52 Å3 |
| Hydrophobicity | 0.098 |
| Hydrophilicity | 1.459 |
| Buriedness | 0.855 |
| Don/acc character | 2.007 |
| SiteScore | 1.126 |
| D Score | 0.812 |
| Compound | SPM |
| Residue | . / 1515 |
| Chain | XA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 753.23 Å3 |
| Hydrophobicity | 0.347 |
| Hydrophilicity | 1.285 |
| Buriedness | 0.846 |
| Don/acc character | 1.222 |
| SiteScore | 1.249 |
| D Score | 1.029 |
| Compound | SPM |
| Residue | . / 1516 |
| Chain | YA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 183.51 Å3 |
| Hydrophobicity | 0.057 |
| Hydrophilicity | 1.102 |
| Buriedness | 0.632 |
| Don/acc character | 3.760 |
| SiteScore | 0.901 |
| D Score | 0.698 |
| Compound | SPM |
| Residue | . / 1517 |
| Chain | ZA / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 762.83 Å3 |
| Hydrophobicity | 0.032 |
| Hydrophilicity | 1.396 |
| Buriedness | 0.749 |
| Don/acc character | 1.604 |
| SiteScore | 1.184 |
| D Score | 0.935 |
| Compound | SPM |
| Residue | . / 1518 |
| Chain | AB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 615.34 Å3 |
| Hydrophobicity | 0.289 |
| Hydrophilicity | 0.958 |
| Buriedness | 0.742 |
| Don/acc character | 1.522 |
| SiteScore | 1.045 |
| D Score | 1.073 |
| Compound | SPM |
| Residue | . / 1519 |
| Chain | BB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 711.04 Å3 |
| Hydrophobicity | 0.158 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.702 |
| Don/acc character | 2.974 |
| SiteScore | 1.161 |
| D Score | 1.036 |
| Compound | SPM |
| Residue | . / 1520 |
| Chain | CB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 317.96 Å3 |
| Hydrophobicity | 0.082 |
| Hydrophilicity | 1.255 |
| Buriedness | 0.722 |
| Don/acc character | 1.499 |
| SiteScore | 1.166 |
| D Score | 0.964 |
| Compound | SPM |
| Residue | . / 1521 |
| Chain | DB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 380.04 Å3 |
| Hydrophobicity | 0.217 |
| Hydrophilicity | 1.095 |
| Buriedness | 0.700 |
| Don/acc character | 2.210 |
| SiteScore | 1.129 |
| D Score | 0.975 |
| Compound | SPM |
| Residue | . / 1522 |
| Chain | EB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 483.97 Å3 |
| Hydrophobicity | 0.251 |
| Hydrophilicity | 1.322 |
| Buriedness | 0.817 |
| Don/acc character | 1.695 |
| SiteScore | 1.230 |
| D Score | 1.000 |
| Compound | SPM |
| Residue | . / 1523 |
| Chain | FB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 518.27 Å3 |
| Hydrophobicity | 0.177 |
| Hydrophilicity | 1.063 |
| Buriedness | 0.717 |
| Don/acc character | 1.460 |
| SiteScore | 1.141 |
| D Score | 0.995 |
| Compound | SPM |
| Residue | . / 1524 |
| Chain | GB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 487.75 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 1.372 |
| Buriedness | 0.808 |
| Don/acc character | 1.381 |
| SiteScore | 1.073 |
| D Score | 0.977 |
| Compound | SPM |
| Residue | . / 1525 |
| Chain | HB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 516.56 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.507 |
| Buriedness | 0.775 |
| Don/acc character | 1.362 |
| SiteScore | 1.201 |
| D Score | 0.914 |
| Compound | SPM |
| Residue | . / 1526 |
| Chain | IB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 797.13 Å3 |
| Hydrophobicity | 0.091 |
| Hydrophilicity | 1.461 |
| Buriedness | 0.842 |
| Don/acc character | 1.118 |
| SiteScore | 1.247 |
| D Score | 0.969 |
| Compound | SPM |
| Residue | . / 1527 |
| Chain | JB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 203.74 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.281 |
| Buriedness | 0.656 |
| Don/acc character | 2.141 |
| SiteScore | 0.897 |
| D Score | 0.627 |
| Compound | SPM |
| Residue | . / 1528 |
| Chain | KB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 509.70 Å3 |
| Hydrophobicity | 0.143 |
| Hydrophilicity | 1.459 |
| Buriedness | 0.842 |
| Don/acc character | 0.975 |
| SiteScore | 1.246 |
| D Score | 0.969 |
| Compound | SPM |
| Residue | . / 1529 |
| Chain | LB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 37.04 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 2.162 |
| Buriedness | 0.917 |
| Don/acc character | 0.855 |
| SiteScore | 0.847 |
| D Score | 0.210 |
| Compound | SPM |
| Residue | . / 1530 |
| Chain | MB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 737.45 Å3 |
| Hydrophobicity | 0.166 |
| Hydrophilicity | 1.206 |
| Buriedness | 0.783 |
| Don/acc character | 1.572 |
| SiteScore | 1.207 |
| D Score | 1.017 |
| Compound | SPM |
| Residue | . / 1531 |
| Chain | NB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 261.02 Å3 |
| Hydrophobicity | 0.194 |
| Hydrophilicity | 0.879 |
| Buriedness | 0.643 |
| Don/acc character | 4.356 |
| SiteScore | 1.020 |
| D Score | 0.880 |
| Compound | SPM |
| Residue | . / 1532 |
| Chain | OB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 161.90 Å3 |
| Hydrophobicity | 0.842 |
| Hydrophilicity | 1.012 |
| Buriedness | 0.736 |
| Don/acc character | 1.023 |
| SiteScore | 0.945 |
| D Score | 0.749 |
| Compound | SPM |
| Residue | . / 1533 |
| Chain | PB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 310.42 Å3 |
| Hydrophobicity | 0.138 |
| Hydrophilicity | 1.294 |
| Buriedness | 0.694 |
| Don/acc character | 1.685 |
| SiteScore | 1.117 |
| D Score | 0.896 |
| Compound | SPM |
| Residue | . / 1534 |
| Chain | QB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 313.85 Å3 |
| Hydrophobicity | 0.010 |
| Hydrophilicity | 1.211 |
| Buriedness | 0.776 |
| Don/acc character | 1.100 |
| SiteScore | 0.864 |
| D Score | 0.577 |
| Compound | SPM |
| Residue | . / 1535 |
| Chain | RB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 476.43 Å3 |
| Hydrophobicity | 0.559 |
| Hydrophilicity | 1.352 |
| Buriedness | 0.877 |
| Don/acc character | 0.920 |
| SiteScore | 1.120 |
| D Score | 1.025 |
| Compound | SPM |
| Residue | . / 1536 |
| Chain | SB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 380.04 Å3 |
| Hydrophobicity | 0.006 |
| Hydrophilicity | 1.406 |
| Buriedness | 0.692 |
| Don/acc character | 1.706 |
| SiteScore | 1.085 |
| D Score | 0.819 |
| Compound | SPM |
| Residue | . / 1537 |
| Chain | TB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 471.28 Å3 |
| Hydrophobicity | 0.207 |
| Hydrophilicity | 1.427 |
| Buriedness | 0.839 |
| Don/acc character | 0.900 |
| SiteScore | 1.111 |
| D Score | 0.808 |
| Compound | SPM |
| Residue | . / 1538 |
| Chain | UB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 461.68 Å3 |
| Hydrophobicity | 0.049 |
| Hydrophilicity | 1.127 |
| Buriedness | 0.676 |
| Don/acc character | 3.580 |
| SiteScore | 1.135 |
| D Score | 0.978 |
| Compound | SPM |
| Residue | . / 1539 |
| Chain | VB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 895.23 Å3 |
| Hydrophobicity | 0.185 |
| Hydrophilicity | 1.168 |
| Buriedness | 0.795 |
| Don/acc character | 2.157 |
| SiteScore | 1.215 |
| D Score | 1.036 |
| Compound | SPM |
| Residue | . / 1540 |
| Chain | WB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 766.61 Å3 |
| Hydrophobicity | 0.048 |
| Hydrophilicity | 1.620 |
| Buriedness | 0.893 |
| Don/acc character | 0.813 |
| SiteScore | 1.130 |
| D Score | 0.947 |
| Compound | SPM |
| Residue | . / 1541 |
| Chain | XB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 117.31 Å3 |
| Hydrophobicity | 0.845 |
| Hydrophilicity | 0.924 |
| Buriedness | 0.735 |
| Don/acc character | 2.301 |
| SiteScore | 0.972 |
| D Score | 0.791 |
| Compound | SPM |
| Residue | . / 1542 |
| Chain | YB / 2 |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 348.83 Å3 |
| Hydrophobicity | 0.022 |
| Hydrophilicity | 1.197 |
| Buriedness | 0.737 |
| Don/acc character | 1.818 |
| SiteScore | 1.115 |
| D Score | 0.914 |
| Compound | SPM |
| Residue | . / 301 |
| Chain | VD / E |
| Non-redundant | True |
| Interacting RNA chains | A/2 |
| Volume | 151.95 Å3 |
| Hydrophobicity | 0.102 |
| Hydrophilicity | 0.986 |
| Buriedness | 0.754 |
| Don/acc character | 2.526 |
| SiteScore | 0.685 |
| D Score | 0.413 |