Harnessing RIBOnucleic acid - Small molecules Structures
Combine filters to refine your query. Each filter opens a dialog showing the values available in the data.
Crystal structure of an RNA aptamer bound to bromo-ligand analog in complex with Fab
SM: 2ZZ
Crystal structure of an RNA aptamer bound to trifluoroethyl-ligand analog in complex with Fab
SM: 2ZY
Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch
SM: 2BA 2BA
Thermovirga lienii c-di-AMP riboswitch
c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak
ydao riboswitch binding to c-di-AMP
structure of ydao riboswitch binding with c-di-dAMP
Crystal structure of mutant ribosomal protein M218L TthL1 in complex with 80nt 23S RNA from Thermus thermophilus
SM: MES
Crystal structure of a eukaryotic group II intron lariat
SM: SPM SPM
Crystal Structure of a PreQ1 Riboswitch
SM: PRF
Crystal structure of the Spinach RNA aptamer in complex with DFHBI, magnesium ions
SM: 38E
Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome
SM: PAR PAR
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome
Crystal structure of the E. coli ribosome bound to flopristin.
SM: VIF VIF
Crystal structure of the E. coli ribosome bound to dalfopristin.
SM: DOL DOL
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
SM: VIR VIR
Crystal structure of Anisomycin bound to the yeast 80S ribosome
SM: ANM ANM
Crystal structure of Geneticin bound to the yeast 80S ribosome
SM: GET
Crystal structure of Homoharringtonine bound to the yeast 80S ribosome
SM: HMT HMT
Crystal structure of Lycorine bound to the yeast 80S ribosome
SM: 3KD 3KD
Crystal structure of Verrucarin bound to the yeast 80S ribosome
SM: 3L2 3L2
Crystal structure of Narciclasine bound to the yeast 80S ribosome
SM: 3KF 3KF
Crystal structure of Nagilactone C bound to the yeast 80S ribosome
SM: 3J2 3J2
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
SM: 3J6 3J6
Crystal structure of Blasticidin S bound to the yeast 80S ribosome
SM: BLS BLS
Crystal structure of T-2 toxin bound to the yeast 80S ribosome
SM: ZBA ZBA
Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
SM: KSG KSG
Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin
Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
SM: NMY NMY NMY NMY
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
SM: LLL LLL LLL LLL LLL LLL LLL LLL
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).
SM: LLL LLL LLL LLL
Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.
SM: NMY NMY NMY NMY SCM SCM
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.
Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.
The crystal structure of the 70S ribosome bound to EF-Tu and tRNA
SM: GDP PAR PAR
Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).
SM: PAR PAR PAR PAR
Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.
SM: HYG HYG
Crystal structure of the E. coli ribosome bound to chloramphenicol.
SM: CLM
Crystal structure of the E. coli ribosome bound to clindamycin.
SM: CLY
Structure of the Thermus thermophilus ribosome complexed with chloramphenicol.
SM: CLM CLM
The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.
SM: T8B T8B
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Crystal structure of the bacterial ribosome ram mutation G347U.
Crystal structure of the bacterial ribosome ram mutation G299A.
Crystal Structure of the 70S ribosome with tetracycline.
SM: TAC TAC
Crystal Structure of the 70S ribosome with tigecycline.
SM: T1C T1C
Allosteric control of the ribosome by small-molecule antibiotics
SM: NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY NMY
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.
SM: FUA FUA NMY NMY NMY NMY NMY NMY
Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
SM: NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG NEG
Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO
Crystal structure of the E. coli ribosome bound to negamycin.
SM: NEG
The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid
SM: EPE EPE EPE EPE ZLD
The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205
SM: 3LK EPE EPE EPE EPE
Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22 in complex with erythromycin
SM: ERY
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
SM: PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8