HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4w92

System information

Experimental technique X-ray
Experimental resolution 3.21
System mass 50.53 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Bacillus
RCSB PDB Entry 4w92
Reference Jones Christopher P, Ferré‐D'Amaré Adrian R. . Crystal structure of a c‐di‐AMP riboswitch reveals an internally pseudo‐dimeric RNA The EMBO Journal
Equivalence Class NR_all_00626.3
BGSU version: 4.49

Compound 2BA
Residue . / 208
Chain J / C
Non-redundant True
Interacting RNA chains B/C
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/C: riboswitch
RNA family global riboswitch
Volume 419.83 Å3
Hydrophobicity 0.117
Hydrophilicity 0.925
Buriedness 0.660
Don/acc character 1.163
SiteScore 0.907
D Score 0.919
Kd

Compound 2BA
Residue . / 209
Chain K / C
Non-redundant True
Interacting RNA chains B/C
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains B/C: riboswitch
RNA family global riboswitch
Volume 444.87 Å3
Hydrophobicity 0.281
Hydrophilicity 1.040
Buriedness 0.724
Don/acc character 1.094
SiteScore 1.006
D Score 1.021
Kd