Complex 4wfb
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.43 |
| System mass | 1367.05 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Staphylococcus |
| RCSB PDB Entry | 4wfb |
| Reference | Eyal Zohar, Matzov Donna, Krupkin Miri, Wekselman Itai, Paukner Susanne, Zimmerman Ella, Rozenberg Haim, Bashan Anat, Yonath Ada. 2015. Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_90633.30
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 3LK |
| Residue | . / 3001 |
| Chain | CA / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 674.00 Å3 |
| Hydrophobicity | 0.359 |
| Hydrophilicity | 1.185 |
| Buriedness | 0.769 |
| Don/acc character | 1.397 |
| SiteScore | 1.198 |
| D Score | 1.015 |
| Kd | — |
| Compound | EPE |
| Residue | . / 3421 |
| Chain | GQ / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 383.47 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 1.292 |
| Buriedness | 0.791 |
| Don/acc character | 2.196 |
| SiteScore | 0.943 |
| D Score | 0.648 |
| Kd | — |
| Compound | EPE |
| Residue | . / 3422 |
| Chain | HQ / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | EPE |
| Residue | . / 3423 |
| Chain | IQ / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 61.40 Å3 |
| Hydrophobicity | 0.014 |
| Hydrophilicity | 0.615 |
| Buriedness | 0.522 |
| Don/acc character | 4.847 |
| SiteScore | 1.110 |
| D Score | 1.048 |
| Kd | — |
| Compound | EPE |
| Residue | . / 3424 |
| Chain | JQ / X |
| Non-redundant | True |
| Interacting RNA chains | A/X |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/X: rRNA |
| RNA family global | rRNA |
| Volume | 242.16 Å3 |
| Hydrophobicity | 0.019 |
| Hydrophilicity | 0.707 |
| Buriedness | 0.519 |
| Don/acc character | 3.122 |
| SiteScore | 0.945 |
| D Score | 1.021 |
| Kd | — |