HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4woi

System information

Experimental technique X-ray
Experimental resolution 3.00
System mass 4419.08 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 5
Organism Escherichia
RCSB PDB Entry 4woi
Reference Wasserman Michael R., Pulk Arto, Zhou Zhou, Altman Roger B., Zinder John C., Green Keith D., Garneau-Tsodikova Sylvie, Doudna Cate Jamie H., Blanchard Scott C.. . Chemically related 4,5-linked aminoglycoside antibiotics drive subunit rotation in opposite directions Nature Communications

Compound PAR
Residue . / 1672
Chain ZF / AA
Non-redundant True
Interacting RNA chains Y/BA, A/AA
Volume 482.94 Å3
Hydrophobicity 0.050
Hydrophilicity 1.082
Buriedness 0.664
Don/acc character 1.987
SiteScore 0.966
D Score 0.971

Compound PAR
Residue . / 3001
Chain BG / BA
Non-redundant True
Interacting RNA chains Y/BA, A/AA
Volume 243.19 Å3
Hydrophobicity 0.177
Hydrophilicity 0.925
Buriedness 0.695
Don/acc character 2.904
SiteScore 0.800
D Score 0.773

Compound PAR
Residue . / 3005
Chain FG / BA
Non-redundant False
Interacting RNA chains Y/BA
Volume 226.04 Å3
Hydrophobicity 0.031
Hydrophilicity 0.916
Buriedness 0.644
Don/acc character 3.039
SiteScore 0.663
D Score 0.611

Compound PAR
Residue . / 3167
Chain GU / CA
Non-redundant True
Interacting RNA chains JC/DA, EB/CA
Volume 274.74 Å3
Hydrophobicity 0.085
Hydrophilicity 1.013
Buriedness 0.670
Don/acc character 2.034
SiteScore 0.817
D Score 0.794

Compound PAR
Residue . / 3168
Chain HU / CA
Non-redundant True
Interacting RNA chains EB/CA
Volume 243.19 Å3
Hydrophobicity 0.009
Hydrophilicity 0.992
Buriedness 0.640
Don/acc character 2.729
SiteScore 0.746
D Score 0.712

Compound PAR
Residue . / 1655
Chain SW / DA
Non-redundant True
Interacting RNA chains JC/DA, EB/CA
Volume 159.15 Å3
Hydrophobicity 0.011
Hydrophilicity 1.095
Buriedness 0.611
Don/acc character 2.309
SiteScore 0.695
D Score 0.633