Complex 4woi
System information
Experimental technique | X-ray |
Experimental resolution | 3.00 |
System mass | 4419.08 kDa |
Deposition year | 2014 |
Molecule type | RNA/Protein |
# RNA entities | 5 |
Organism | Escherichia |
RCSB PDB Entry | 4woi |
Reference | Wasserman Michael R., Pulk Arto, Zhou Zhou, Altman Roger B., Zinder John C., Green Keith D., Garneau-Tsodikova Sylvie, Doudna Cate Jamie H., Blanchard Scott C.. . Chemically related 4,5-linked aminoglycoside antibiotics drive subunit rotation in opposite directions Nature Communications |
Compound | PAR |
Residue | . / 1672 |
Chain | ZF / AA |
Non-redundant | True |
Interacting RNA chains | Y/BA, A/AA |
Volume | 482.94 Å3 |
Hydrophobicity | 0.050 |
Hydrophilicity | 1.082 |
Buriedness | 0.664 |
Don/acc character | 1.987 |
SiteScore | 0.966 |
D Score | 0.971 |
Compound | PAR |
Residue | . / 3001 |
Chain | BG / BA |
Non-redundant | True |
Interacting RNA chains | Y/BA, A/AA |
Volume | 243.19 Å3 |
Hydrophobicity | 0.177 |
Hydrophilicity | 0.925 |
Buriedness | 0.695 |
Don/acc character | 2.904 |
SiteScore | 0.800 |
D Score | 0.773 |
Compound | PAR |
Residue | . / 3005 |
Chain | FG / BA |
Non-redundant | False |
Interacting RNA chains | Y/BA |
Volume | 226.04 Å3 |
Hydrophobicity | 0.031 |
Hydrophilicity | 0.916 |
Buriedness | 0.644 |
Don/acc character | 3.039 |
SiteScore | 0.663 |
D Score | 0.611 |
Compound | PAR |
Residue | . / 3167 |
Chain | GU / CA |
Non-redundant | True |
Interacting RNA chains | JC/DA, EB/CA |
Volume | 274.74 Å3 |
Hydrophobicity | 0.085 |
Hydrophilicity | 1.013 |
Buriedness | 0.670 |
Don/acc character | 2.034 |
SiteScore | 0.817 |
D Score | 0.794 |
Compound | PAR |
Residue | . / 3168 |
Chain | HU / CA |
Non-redundant | True |
Interacting RNA chains | EB/CA |
Volume | 243.19 Å3 |
Hydrophobicity | 0.009 |
Hydrophilicity | 0.992 |
Buriedness | 0.640 |
Don/acc character | 2.729 |
SiteScore | 0.746 |
D Score | 0.712 |
Compound | PAR |
Residue | . / 1655 |
Chain | SW / DA |
Non-redundant | True |
Interacting RNA chains | JC/DA, EB/CA |
Volume | 159.15 Å3 |
Hydrophobicity | 0.011 |
Hydrophilicity | 1.095 |
Buriedness | 0.611 |
Don/acc character | 2.309 |
SiteScore | 0.695 |
D Score | 0.633 |