HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v4h

System information

Experimental technique X-ray
Experimental resolution 3.46
System mass 4301.00 kDa
Deposition year 2006
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 4v4h
Reference Schuwirth Barbara S, Day J Michael, Hau Cathy W, Janssen Gary R, Dahlberg Albert E, Cate Jamie H Doudna, Vila-Sanjurjo Antón. . Structural analysis of kasugamycin inhibition of translation Nature Structural & Molecular Biology

Compound KSG
Residue . / 1601
Chain AD / AA
Non-redundant True
Interacting RNA chains A/AA
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/AA: rRNA
RNA family global rRNA
Volume 420.86 Å3
Hydrophobicity 0.043
Hydrophilicity 1.386
Buriedness 0.714
Don/acc character 1.969
SiteScore 1.160
D Score 0.916
Kd

Compound KSG
Residue . / 1601
Chain PJ / CA
Non-redundant True
Interacting RNA chains AB/CA
RNA environment detailled ion
RNA environment global RNA
RNA family chains AB/CA: rRNA
RNA family global rRNA
Volume 369.75 Å3
Hydrophobicity 0.078
Hydrophilicity 1.394
Buriedness 0.695
Don/acc character 1.801
SiteScore 1.148
D Score 0.902
Kd