HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v57

System information

Experimental technique X-ray
Experimental resolution 3.50
System mass 4298.30 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v57
Reference Borovinskaya Maria A., Shoji Shinichiro, Holton James M., Fredrick Kurt, Cate Jamie H. D.. . A Steric Block in Translation Caused by the Antibiotic Spectinomycin ACS Chemical Biology

Compound NMY
Residue . / 1601
Chain AD / AA
Non-redundant True
Interacting RNA chains A/AA
Volume 285.72 Å3
Hydrophobicity 0.008
Hydrophilicity 1.104
Buriedness 0.645
Don/acc character 3.485
SiteScore 0.677
D Score 0.599

Compound NMY
Residue . / 3001
Chain KF / BB
Non-redundant False
Interacting RNA chains W/BB, A/AA
Volume 244.90 Å3
Hydrophobicity 0.112
Hydrophilicity 1.328
Buriedness 0.667
Don/acc character 1.410
SiteScore 0.890
D Score 0.792

Compound NMY
Residue . / 1601
Chain SJ / CA
Non-redundant False
Interacting RNA chains AB/CA
Volume 175.27 Å3
Hydrophobicity 0.218
Hydrophilicity 1.022
Buriedness 0.663
Don/acc character 2.218
SiteScore 0.878
D Score 0.873

Compound NMY
Residue . / 3001
Chain BM / DB
Non-redundant False
Interacting RNA chains AB/CA, WB/DB
Volume 153.32 Å3
Hydrophobicity 0.107
Hydrophilicity 0.849
Buriedness 0.645
Don/acc character 2.544
SiteScore 0.612
D Score 0.551