HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4w29

System information

Experimental technique X-ray
Experimental resolution 3.80
System mass 4630.82 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 4w29
Reference Zhou Jie, Lancaster Laura, Donohue John Paul, Noller Harry F.. . How the ribosome hands the A-site tRNA to the P site during EF-G–catalyzed translocation Science

Compound NMY
Residue . / 1601
Chain UD / AA
Non-redundant True
Interacting RNA chains U/AA
Volume 811.54 Å3
Hydrophobicity 0.093
Hydrophilicity 1.036
Buriedness 0.667
Don/acc character 2.382
SiteScore 0.981
D Score 1.003

Compound NMY
Residue . / 2902
Chain WD / BA
Non-redundant True
Interacting RNA chains HB/BA, U/AA
Volume 172.87 Å3
Hydrophobicity 0.462
Hydrophilicity 0.801
Buriedness 0.684
Don/acc character 1.964
SiteScore 0.615
D Score 0.548

Compound NMY
Residue . / 2903
Chain XD / BA
Non-redundant True
Interacting RNA chains HB/BA
Volume 62.08 Å3
Hydrophobicity 0.000
Hydrophilicity 0.962
Buriedness 0.565
Don/acc character 3.051
SiteScore 0.447
D Score 0.351

Compound NMY
Residue . / 2904
Chain YD / BA
Non-redundant True
Interacting RNA chains HB/BA
Volume 1367.88 Å3
Hydrophobicity 0.160
Hydrophilicity 1.288
Buriedness 0.763
Don/acc character 2.268
SiteScore 1.043
D Score 0.978

Compound NMY
Residue . / 2901
Chain DE / DA
Non-redundant False
Interacting RNA chains QD/DA
Volume 193.79 Å3
Hydrophobicity 0.206
Hydrophilicity 1.029
Buriedness 0.670
Don/acc character 1.282
SiteScore 0.684
D Score 0.623