HARIBOSS

Harnessing RIBOnucleic acid – Small molecules Structures


Complex 4w29

System information

Experimental technique X-ray
Experimental resolution 3.80
System mass 4630.82
Deposition year 2014
Molecule type RNA/protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 4w29
Reference Zhou Jie, Lancaster Laura, Donohue John Paul, Noller Harry F.. . How the ribosome hands the A-site tRNA to the P site during EF-G–catalyzed translocation Science

Pocket NMY_.:UD/1601:AA

Compound NMY
Non-redundant True
Interacting RNA chains U/AA
Volume 673.31
Hydrophobicity 0.284
Hydrophilicity 0.850
Buriedness 0.663
Don/acc character 0.928
SiteScore 1.013
D Score 1.061

Pocket NMY_.:WD/2902:BA

Compound NMY
Non-redundant True
Interacting RNA chains HB/BA, U/AA
Volume 169.44
Hydrophobicity 0.398
Hydrophilicity 0.840
Buriedness 0.687
Don/acc character 0.816
SiteScore 0.610
D Score 0.538

Pocket NMY_.:XD/2903:BA

Compound NMY
Non-redundant False
Interacting RNA chains HB/BA
Volume None
Hydrophobicity None
Hydrophilicity None
Buriedness None
Don/acc character None
SiteScore None
D Score None

Pocket NMY_.:YD/2904:BA

Compound NMY
Non-redundant True
Interacting RNA chains HB/BA
Volume None
Hydrophobicity None
Hydrophilicity None
Buriedness None
Don/acc character None
SiteScore None
D Score None

Pocket NMY_.:DE/2901:DA

Compound NMY
Non-redundant True
Interacting RNA chains QD/DA
Volume None
Hydrophobicity None
Hydrophilicity None
Buriedness None
Don/acc character None
SiteScore None
D Score None