HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4w29

System information

Experimental technique X-ray
Experimental resolution 3.80
System mass 4630.82 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 5
Organism Thermus
RCSB PDB Entry 4w29
Reference Zhou Jie, Lancaster Laura, Donohue John Paul, Noller Harry F.. . How the ribosome hands the A-site tRNA to the P site during EF-G–catalyzed translocation Science

Compound NMY
Residue . / 1601
Chain UD / AA
Non-redundant True
Interacting RNA chains U/AA
Volume 673.31 Å3
Hydrophobicity 0.284
Hydrophilicity 0.850
Buriedness 0.663
Don/acc character 0.928
SiteScore 1.013
D Score 1.061

Compound NMY
Residue . / 2902
Chain WD / BA
Non-redundant True
Interacting RNA chains HB/BA, U/AA
Volume 169.44 Å3
Hydrophobicity 0.398
Hydrophilicity 0.840
Buriedness 0.687
Don/acc character 0.816
SiteScore 0.610
D Score 0.538

Compound NMY
Residue . / 2903
Chain XD / BA
Non-redundant True
Interacting RNA chains HB/BA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 2904
Chain YD / BA
Non-redundant False
Interacting RNA chains HB/BA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 2901
Chain DE / DA
Non-redundant True
Interacting RNA chains QD/DA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -