Complex 4v9c
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 4402.45 kDa |
| Deposition year | 2012 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4v9c |
| Reference | Wang Leyi, Pulk Arto, Wasserman Michael R, Feldman Michael B, Altman Roger B, Cate Jamie H Doudna, Blanchard Scott C. . Allosteric control of the ribosome by small-molecule antibiotics Nature Structural & Molecular Biology |
| Compound | NMY |
| Residue | . / 3187 |
| Chain | FW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 226.38 Å3 |
| Hydrophobicity | 0.038 |
| Hydrophilicity | 1.050 |
| Buriedness | 0.688 |
| Don/acc character | 1.864 |
| SiteScore | 0.812 |
| D Score | 0.585 |
| Compound | NMY |
| Residue | . / 1655 |
| Chain | HF / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA, X/BA |
| Volume | 489.12 Å3 |
| Hydrophobicity | 0.023 |
| Hydrophilicity | 1.085 |
| Buriedness | 0.637 |
| Don/acc character | 2.640 |
| SiteScore | 1.110 |
| D Score | 0.969 |
| Compound | NMY |
| Residue | . / 1656 |
| Chain | IF / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA, X/BA |
| Volume | 80.61 Å3 |
| Hydrophobicity | 0.080 |
| Hydrophilicity | 0.707 |
| Buriedness | 0.570 |
| Don/acc character | 4.013 |
| SiteScore | 0.741 |
| D Score | 0.499 |
| Compound | NMY |
| Residue | . / 1657 |
| Chain | JF / AA |
| Non-redundant | True |
| Interacting RNA chains | A/AA |
| Volume | 125.20 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 1.420 |
| Buriedness | 0.759 |
| Don/acc character | 0.681 |
| SiteScore | 0.866 |
| D Score | 0.516 |
| Compound | NMY |
| Residue | . / 3161 |
| Chain | QL / BA |
| Non-redundant | True |
| Interacting RNA chains | A/AA, X/BA |
| Volume | 269.94 Å3 |
| Hydrophobicity | 0.175 |
| Hydrophilicity | 0.905 |
| Buriedness | 0.676 |
| Don/acc character | 1.815 |
| SiteScore | 0.957 |
| D Score | 0.789 |
| Compound | NMY |
| Residue | . / 3162 |
| Chain | RL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 613.63 Å3 |
| Hydrophobicity | 0.065 |
| Hydrophilicity | 1.143 |
| Buriedness | 0.696 |
| Don/acc character | 2.272 |
| SiteScore | 1.148 |
| D Score | 0.985 |
| Compound | NMY |
| Residue | . / 3163 |
| Chain | SL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 218.49 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 1.106 |
| Buriedness | 0.667 |
| Don/acc character | 1.731 |
| SiteScore | 0.757 |
| D Score | 0.641 |
| Compound | NMY |
| Residue | . / 3164 |
| Chain | TL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 314.53 Å3 |
| Hydrophobicity | 0.187 |
| Hydrophilicity | 1.012 |
| Buriedness | 0.690 |
| Don/acc character | 2.604 |
| SiteScore | 0.748 |
| D Score | 0.700 |
| Compound | NMY |
| Residue | . / 3165 |
| Chain | UL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 37.73 Å3 |
| Hydrophobicity | 0.107 |
| Hydrophilicity | 1.018 |
| Buriedness | 0.627 |
| Don/acc character | 0.883 |
| SiteScore | 0.554 |
| D Score | 0.275 |
| Compound | NMY |
| Residue | . / 3166 |
| Chain | VL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 332.71 Å3 |
| Hydrophobicity | 0.002 |
| Hydrophilicity | 1.186 |
| Buriedness | 0.661 |
| Don/acc character | 1.826 |
| SiteScore | 1.006 |
| D Score | 0.797 |
| Compound | NMY |
| Residue | . / 3167 |
| Chain | WL / BA |
| Non-redundant | True |
| Interacting RNA chains | X/BA |
| Volume | 229.47 Å3 |
| Hydrophobicity | 0.003 |
| Hydrophilicity | 0.982 |
| Buriedness | 0.642 |
| Don/acc character | 2.675 |
| SiteScore | 0.799 |
| D Score | 0.588 |
| Compound | NMY |
| Residue | . / 1672 |
| Chain | ZO / CA |
| Non-redundant | True |
| Interacting RNA chains | CB/CA |
| Volume | 283.32 Å3 |
| Hydrophobicity | 0.148 |
| Hydrophilicity | 0.909 |
| Buriedness | 0.669 |
| Don/acc character | 3.275 |
| SiteScore | 0.986 |
| D Score | 0.827 |
| Compound | NMY |
| Residue | . / 3184 |
| Chain | CW / DA |
| Non-redundant | True |
| Interacting RNA chains | CB/CA, AC/DA |
| Volume | 237.01 Å3 |
| Hydrophobicity | 0.240 |
| Hydrophilicity | 0.823 |
| Buriedness | 0.682 |
| Don/acc character | 3.987 |
| SiteScore | 0.875 |
| D Score | 0.689 |
| Compound | NMY |
| Residue | . / 3185 |
| Chain | DW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 95.01 Å3 |
| Hydrophobicity | 0.041 |
| Hydrophilicity | 0.851 |
| Buriedness | 0.598 |
| Don/acc character | 3.692 |
| SiteScore | 0.760 |
| D Score | 0.561 |
| Compound | NMY |
| Residue | . / 3186 |
| Chain | EW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 300.13 Å3 |
| Hydrophobicity | 0.072 |
| Hydrophilicity | 1.258 |
| Buriedness | 0.684 |
| Don/acc character | 1.715 |
| SiteScore | 0.975 |
| D Score | 0.728 |
| Compound | NMY |
| Residue | . / 3188 |
| Chain | GW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 671.25 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.177 |
| Buriedness | 0.708 |
| Don/acc character | 2.066 |
| SiteScore | 1.156 |
| D Score | 0.981 |
| Compound | NMY |
| Residue | . / 3189 |
| Chain | HW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 267.88 Å3 |
| Hydrophobicity | 0.136 |
| Hydrophilicity | 0.921 |
| Buriedness | 0.672 |
| Don/acc character | 2.796 |
| SiteScore | 0.863 |
| D Score | 0.667 |
| Compound | NMY |
| Residue | . / 3190 |
| Chain | IW / DA |
| Non-redundant | True |
| Interacting RNA chains | AC/DA |
| Volume | 296.70 Å3 |
| Hydrophobicity | 0.152 |
| Hydrophilicity | 1.019 |
| Buriedness | 0.655 |
| Don/acc character | 2.547 |
| SiteScore | 0.836 |
| D Score | 0.813 |