HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v9c

System information

Experimental technique X-ray
Experimental resolution 3.30
System mass 4402.45 kDa
Deposition year 2012
Molecule type RNA/Protein
# RNA entities 5
Organism Escherichia
RCSB PDB Entry 4v9c
Reference Wang Leyi, Pulk Arto, Wasserman Michael R, Feldman Michael B, Altman Roger B, Cate Jamie H Doudna, Blanchard Scott C. . Allosteric control of the ribosome by small-molecule antibiotics Nature Structural & Molecular Biology

Compound NMY
Residue . / 1656
Chain IF / AA
Non-redundant True
Interacting RNA chains X/BA, A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 1657
Chain JF / AA
Non-redundant True
Interacting RNA chains A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 3161
Chain QL / BA
Non-redundant True
Interacting RNA chains X/BA, A/AA
Volume 235.30 Å3
Hydrophobicity 0.233
Hydrophilicity 0.998
Buriedness 0.706
Don/acc character 1.274
SiteScore 0.744
D Score 0.693

Compound NMY
Residue . / 3167
Chain WL / BA
Non-redundant False
Interacting RNA chains X/BA
Volume 222.61 Å3
Hydrophobicity 0.000
Hydrophilicity 1.199
Buriedness 0.659
Don/acc character 2.635
SiteScore 0.705
D Score 0.599

Compound NMY
Residue . / 1672
Chain ZO / CA
Non-redundant False
Interacting RNA chains CB/CA
Volume 277.83 Å3
Hydrophobicity 0.270
Hydrophilicity 0.926
Buriedness 0.672
Don/acc character 1.433
SiteScore 0.806
D Score 0.786

Compound NMY
Residue . / 3184
Chain CW / DA
Non-redundant False
Interacting RNA chains AC/DA, CB/CA
Volume 233.93 Å3
Hydrophobicity 0.209
Hydrophilicity 0.967
Buriedness 0.670
Don/acc character 1.383
SiteScore 0.770
D Score 0.738

Compound NMY
Residue . / 3187
Chain FW / DA
Non-redundant True
Interacting RNA chains AC/DA
Volume 215.75 Å3
Hydrophobicity 0.017
Hydrophilicity 1.502
Buriedness 0.708
Don/acc character 1.844
SiteScore 0.682
D Score 0.459

Compound NMY
Residue . / 3190
Chain IW / DA
Non-redundant True
Interacting RNA chains AC/DA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -