HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v9c

System information

Experimental technique X-ray
Experimental resolution 3.30
System mass 4402.45 kDa
Deposition year 2012
Molecule type RNA/Protein
# RNA entities 5
Organism Escherichia
RCSB PDB Entry 4v9c
Reference Wang Leyi, Pulk Arto, Wasserman Michael R, Feldman Michael B, Altman Roger B, Cate Jamie H Doudna, Blanchard Scott C. . Allosteric control of the ribosome by small-molecule antibiotics Nature Structural & Molecular Biology

Compound NMY
Residue . / 1656
Chain IF / AA
Non-redundant True
Interacting RNA chains A/AA, X/BA
Volume 144.40 Å3
Hydrophobicity 0.000
Hydrophilicity 1.148
Buriedness 0.630
Don/acc character 1.895
SiteScore 0.649
D Score 0.552

Compound NMY
Residue . / 1657
Chain JF / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 105.99 Å3
Hydrophobicity 0.024
Hydrophilicity 1.595
Buriedness 0.737
Don/acc character 0.485
SiteScore 0.751
D Score 0.509

Compound NMY
Residue . / 3161
Chain QL / BA
Non-redundant False
Interacting RNA chains A/AA, X/BA
Volume 271.31 Å3
Hydrophobicity 0.237
Hydrophilicity 1.017
Buriedness 0.675
Don/acc character 3.381
SiteScore 0.819
D Score 0.795

Compound NMY
Residue . / 3167
Chain WL / BA
Non-redundant True
Interacting RNA chains X/BA
Volume 230.15 Å3
Hydrophobicity 0.008
Hydrophilicity 0.929
Buriedness 0.642
Don/acc character 2.891
SiteScore 0.659
D Score 0.606

Compound NMY
Residue . / 1672
Chain ZO / CA
Non-redundant False
Interacting RNA chains CB/CA
Volume 281.26 Å3
Hydrophobicity 0.158
Hydrophilicity 0.938
Buriedness 0.672
Don/acc character 3.067
SiteScore 0.837
D Score 0.825

Compound NMY
Residue . / 3184
Chain CW / DA
Non-redundant True
Interacting RNA chains CB/CA, AC/DA
Volume 234.95 Å3
Hydrophobicity 0.195
Hydrophilicity 0.996
Buriedness 0.683
Don/acc character 5.999
SiteScore 0.746
D Score 0.701

Compound NMY
Residue . / 3187
Chain FW / DA
Non-redundant False
Interacting RNA chains AC/DA
Volume 233.24 Å3
Hydrophobicity 0.110
Hydrophilicity 1.001
Buriedness 0.686
Don/acc character 2.076
SiteScore 0.706
D Score 0.649

Compound NMY
Residue . / 3190
Chain IW / DA
Non-redundant True
Interacting RNA chains AC/DA
Volume 296.01 Å3
Hydrophobicity 0.138
Hydrophilicity 1.050
Buriedness 0.654
Don/acc character 3.027
SiteScore 0.855
D Score 0.842