Complex 4v9c
System information
Experimental technique | X-ray |
Experimental resolution | 3.30 |
System mass | 4402.45 kDa |
Deposition year | 2012 |
Molecule type | RNA/Protein |
# RNA entities | 5 |
Organism | Escherichia |
RCSB PDB Entry | 4v9c |
Reference | Wang Leyi, Pulk Arto, Wasserman Michael R, Feldman Michael B, Altman Roger B, Cate Jamie H Doudna, Blanchard Scott C. . Allosteric control of the ribosome by small-molecule antibiotics Nature Structural & Molecular Biology |
Compound | NMY |
Residue | . / 1656 |
Chain | IF / AA |
Non-redundant | True |
Interacting RNA chains | A/AA, X/BA |
Volume | 144.40 Å3 |
Hydrophobicity | 0.000 |
Hydrophilicity | 1.148 |
Buriedness | 0.630 |
Don/acc character | 1.895 |
SiteScore | 0.649 |
D Score | 0.552 |
Compound | NMY |
Residue | . / 1657 |
Chain | JF / AA |
Non-redundant | False |
Interacting RNA chains | A/AA |
Volume | 105.99 Å3 |
Hydrophobicity | 0.024 |
Hydrophilicity | 1.595 |
Buriedness | 0.737 |
Don/acc character | 0.485 |
SiteScore | 0.751 |
D Score | 0.509 |
Compound | NMY |
Residue | . / 3161 |
Chain | QL / BA |
Non-redundant | False |
Interacting RNA chains | A/AA, X/BA |
Volume | 271.31 Å3 |
Hydrophobicity | 0.237 |
Hydrophilicity | 1.017 |
Buriedness | 0.675 |
Don/acc character | 3.381 |
SiteScore | 0.819 |
D Score | 0.795 |
Compound | NMY |
Residue | . / 3167 |
Chain | WL / BA |
Non-redundant | True |
Interacting RNA chains | X/BA |
Volume | 230.15 Å3 |
Hydrophobicity | 0.008 |
Hydrophilicity | 0.929 |
Buriedness | 0.642 |
Don/acc character | 2.891 |
SiteScore | 0.659 |
D Score | 0.606 |
Compound | NMY |
Residue | . / 1672 |
Chain | ZO / CA |
Non-redundant | False |
Interacting RNA chains | CB/CA |
Volume | 281.26 Å3 |
Hydrophobicity | 0.158 |
Hydrophilicity | 0.938 |
Buriedness | 0.672 |
Don/acc character | 3.067 |
SiteScore | 0.837 |
D Score | 0.825 |
Compound | NMY |
Residue | . / 3184 |
Chain | CW / DA |
Non-redundant | True |
Interacting RNA chains | CB/CA, AC/DA |
Volume | 234.95 Å3 |
Hydrophobicity | 0.195 |
Hydrophilicity | 0.996 |
Buriedness | 0.683 |
Don/acc character | 5.999 |
SiteScore | 0.746 |
D Score | 0.701 |
Compound | NMY |
Residue | . / 3187 |
Chain | FW / DA |
Non-redundant | False |
Interacting RNA chains | AC/DA |
Volume | 233.24 Å3 |
Hydrophobicity | 0.110 |
Hydrophilicity | 1.001 |
Buriedness | 0.686 |
Don/acc character | 2.076 |
SiteScore | 0.706 |
D Score | 0.649 |
Compound | NMY |
Residue | . / 3190 |
Chain | IW / DA |
Non-redundant | True |
Interacting RNA chains | AC/DA |
Volume | 296.01 Å3 |
Hydrophobicity | 0.138 |
Hydrophilicity | 1.050 |
Buriedness | 0.654 |
Don/acc character | 3.027 |
SiteScore | 0.855 |
D Score | 0.842 |