Complex 4u53
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 6630.58 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 4u53 |
| Reference | Garreau de Loubresse Nicolas, Prokhorova Irina, Holtkamp Wolf, Rodnina Marina V., Yusupova Gulnara, Yusupov Marat. 2014. Structural basis for the inhibition of the eukaryotic ribosome Nature |
| Equivalence Class |
NR_all_90506.85
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 3J6 |
| Residue | . / 4213 |
| Chain | XVA / 1 |
| Non-redundant | True |
| Interacting RNA chains | JA/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | JA/1: rRNA |
| RNA family global | rRNA |
| Volume | 678.80 Å3 |
| Hydrophobicity | 0.500 |
| Hydrophilicity | 1.298 |
| Buriedness | 0.778 |
| Don/acc character | 0.984 |
| SiteScore | 1.204 |
| D Score | 0.984 |
| Kd | — |
| Compound | 3J6 |
| Residue | . / 4246 |
| Chain | IUC / 5 |
| Non-redundant | True |
| Interacting RNA chains | KD/5 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | KD/5: rRNA |
| RNA family global | rRNA |
| Volume | 790.27 Å3 |
| Hydrophobicity | 0.360 |
| Hydrophilicity | 1.511 |
| Buriedness | 0.786 |
| Don/acc character | 1.093 |
| SiteScore | 1.209 |
| D Score | 0.919 |
| Kd | — |