HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4u25

System information

Experimental technique X-ray
Experimental resolution 2.90
System mass 4268.91 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 4u25
Reference Noeske Jonas, Huang Jian, Olivier Nelson B., Giacobbe Robert A., Zambrowski Mark, Cate Jamie H. D.. . Synergy of Streptogramin Antibiotics Occurs Independently of Their Effects on Translation Antimicrobial Agents and Chemotherapy
Equivalence Class NR_all_83717.185
BGSU version: 4.48

Compound VIR
Residue . / 3001
Chain VF / BA
Non-redundant True
Interacting RNA chains V/BA
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains V/BA: rRNA
RNA family global rRNA
Volume 388.28 Å3
Hydrophobicity 0.705
Hydrophilicity 0.998
Buriedness 0.781
Don/acc character 2.375
SiteScore 1.053
D Score 0.877
Kd

Compound VIR
Residue . / 3001
Chain SP / DA
Non-redundant True
Interacting RNA chains WB/DA
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains WB/DA: rRNA
RNA family global rRNA
Volume 536.11 Å3
Hydrophobicity 0.547
Hydrophilicity 1.111
Buriedness 0.768
Don/acc character 1.261
SiteScore 0.745
D Score 0.940
Kd