HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5y

System information

Experimental technique X-ray
Experimental resolution 4.45
System mass 4339.77 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v5y
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound PAR
Residue . / 1661
Chain KF / AA
Non-redundant True
Interacting RNA chains A/AA
Volume 243.87 Å3
Hydrophobicity 0.024
Hydrophilicity 1.041
Buriedness 0.630
Don/acc character 3.002
SiteScore 0.602
D Score 0.527

Compound PAR
Residue . / 3111
Chain RJ / BB
Non-redundant True
Interacting RNA chains W/BB, A/AA
Volume 220.21 Å3
Hydrophobicity 0.059
Hydrophilicity 1.342
Buriedness 0.646
Don/acc character 1.537
SiteScore 0.867
D Score 0.764

Compound PAR
Residue . / 1662
Chain CM / CA
Non-redundant False
Interacting RNA chains BB/CA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PAR
Residue . / 3112
Chain LQ / DB
Non-redundant True
Interacting RNA chains BB/CA, XB/DB
Volume 177.33 Å3
Hydrophobicity 0.215
Hydrophilicity 0.932
Buriedness 0.692
Don/acc character 2.493
SiteScore 0.665
D Score 0.600