HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5y

System information

Experimental technique X-ray
Experimental resolution 4.45
System mass 4339.77 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v5y
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound PAR
Residue . / 1661
Chain KF / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 140.97 Å3
Hydrophobicity 0.165
Hydrophilicity 0.963
Buriedness 0.626
Don/acc character 0.802
SiteScore 0.797
D Score 0.784

Compound PAR
Residue . / 3111
Chain RJ / BB
Non-redundant True
Interacting RNA chains W/BB, A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PAR
Residue . / 1662
Chain CM / CA
Non-redundant True
Interacting RNA chains BB/CA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound PAR
Residue . / 3112
Chain LQ / DB
Non-redundant False
Interacting RNA chains XB/DB, BB/CA
Volume 173.56 Å3
Hydrophobicity 0.506
Hydrophilicity 0.818
Buriedness 0.707
Don/acc character 1.450
SiteScore 0.704
D Score 0.655