HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v52

System information

Experimental technique X-ray
Experimental resolution 3.21
System mass 4297.71 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v52
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound NMY
Residue . / 1601
Chain AD / AA
Non-redundant True
Interacting RNA chains A/AA
Volume 252.45 Å3
Hydrophobicity 0.010
Hydrophilicity 1.073
Buriedness 0.647
Don/acc character 3.120
SiteScore 0.666
D Score 0.594

Compound NMY
Residue . / 3001
Chain JF / BB
Non-redundant True
Interacting RNA chains W/BB, A/AA
Volume 174.24 Å3
Hydrophobicity 0.045
Hydrophilicity 1.188
Buriedness 0.598
Don/acc character 1.415
SiteScore 0.768
D Score 0.700

Compound NMY
Residue . / 1601
Chain RJ / CA
Non-redundant False
Interacting RNA chains AB/CA
Volume 202.03 Å3
Hydrophobicity 0.000
Hydrophilicity 1.135
Buriedness 0.649
Don/acc character 1.885
SiteScore 0.629
D Score 0.525

Compound NMY
Residue . / 3001
Chain CM / DB
Non-redundant True
Interacting RNA chains AB/CA, WB/DB
Volume 178.36 Å3
Hydrophobicity 0.012
Hydrophilicity 1.335
Buriedness 0.644
Don/acc character 1.498
SiteScore 0.765
D Score 0.636