HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v52

System information

Experimental technique X-ray
Experimental resolution 3.21
System mass 4297.71 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v52
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound NMY
Residue . / 1601
Chain AD / AA
Non-redundant False
Interacting RNA chains A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 3001
Chain JF / BB
Non-redundant True
Interacting RNA chains W/BB, A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound NMY
Residue . / 1601
Chain RJ / CA
Non-redundant True
Interacting RNA chains AB/CA
Volume 170.47 Å3
Hydrophobicity 0.118
Hydrophilicity 0.874
Buriedness 0.638
Don/acc character 0.937
SiteScore 0.803
D Score 0.795

Compound NMY
Residue . / 3001
Chain CM / DB
Non-redundant False
Interacting RNA chains WB/DB, AB/CA
Volume 176.30 Å3
Hydrophobicity 0.029
Hydrophilicity 1.297
Buriedness 0.646
Don/acc character 0.851
SiteScore 0.761
D Score 0.643