Complex 4v55
System information
| Experimental technique | X-ray |
| Experimental resolution | 4.00 |
| System mass | 4339.11 kDa |
| Deposition year | 2007 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 4v55 |
| Reference | Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology |
| Equivalence Class |
NR_all_83717.186,
NR_all_56726.171
BGSU version: 4.49 |
| Compound | LLL |
| Residue | . / 1661 |
| Chain | KF / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 149.55 Å3 |
| Hydrophobicity | 0.179 |
| Hydrophilicity | 0.859 |
| Buriedness | 0.632 |
| Don/acc character | 2.591 |
| SiteScore | 0.910 |
| D Score | 0.743 |
| Kd | — |
| Compound | LLL |
| Residue | . / 3111 |
| Chain | RJ / BB |
| Non-redundant | True |
| Interacting RNA chains | W/BB |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | W/BB: rRNA |
| RNA family global | rRNA |
| Volume | 85.06 Å3 |
| Hydrophobicity | 0.019 |
| Hydrophilicity | 0.627 |
| Buriedness | 0.458 |
| Don/acc character | 4.660 |
| SiteScore | 1.069 |
| D Score | 1.010 |
| Kd | — |
| Compound | LLL |
| Residue | . / 1662 |
| Chain | CM / CA |
| Non-redundant | True |
| Interacting RNA chains | BB/CA |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BB/CA: rRNA |
| RNA family global | rRNA |
| Volume | 163.61 Å3 |
| Hydrophobicity | 0.115 |
| Hydrophilicity | 1.134 |
| Buriedness | 0.660 |
| Don/acc character | 4.172 |
| SiteScore | 0.935 |
| D Score | 0.724 |
| Kd | — |
| Compound | LLL |
| Residue | . / 3112 |
| Chain | LQ / DB |
| Non-redundant | True |
| Interacting RNA chains | XB/DB |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | XB/DB: rRNA |
| RNA family global | rRNA |
| Volume | 198.60 Å3 |
| Hydrophobicity | 0.146 |
| Hydrophilicity | 1.199 |
| Buriedness | 0.689 |
| Don/acc character | 2.711 |
| SiteScore | 0.799 |
| D Score | 0.520 |
| Kd | — |