HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v55

System information

Experimental technique X-ray
Experimental resolution 4.00
System mass 4339.11 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v55
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound LLL
Residue . / 1661
Chain KF / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 278.86 Å3
Hydrophobicity 0.000
Hydrophilicity 1.078
Buriedness 0.644
Don/acc character 2.765
SiteScore 0.706
D Score 0.644

Compound LLL
Residue . / 3111
Chain RJ / BB
Non-redundant False
Interacting RNA chains W/BB
Volume 126.22 Å3
Hydrophobicity 0.000
Hydrophilicity 1.367
Buriedness 0.667
Don/acc character 3.123
SiteScore 0.557
D Score 0.353

Compound LLL
Residue . / 1662
Chain CM / CA
Non-redundant False
Interacting RNA chains BB/CA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound LLL
Residue . / 3112
Chain LQ / DB
Non-redundant False
Interacting RNA chains XB/DB
Volume 198.94 Å3
Hydrophobicity 0.011
Hydrophilicity 1.308
Buriedness 0.687
Don/acc character 2.538
SiteScore 0.611
D Score 0.437