HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v55

System information

Experimental technique X-ray
Experimental resolution 4.00
System mass 4339.11 kDa
Deposition year 2007
Molecule type RNA/Protein
# RNA entities 3
Organism Escherichia
RCSB PDB Entry 4v55
Reference Borovinskaya Maria A, Pai Raj D, Zhang Wen, Schuwirth Barbara S, Holton James M, Hirokawa Go, Kaji Hideko, Kaji Akira, Cate Jamie H Doudna. . Structural basis for aminoglycoside inhibition of bacterial ribosome recycling Nature Structural & Molecular Biology

Compound LLL
Residue . / 1661
Chain KF / AA
Non-redundant False
Interacting RNA chains A/AA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound LLL
Residue . / 3111
Chain RJ / BB
Non-redundant False
Interacting RNA chains W/BB
Volume 122.11 Å3
Hydrophobicity 0.020
Hydrophilicity 1.339
Buriedness 0.665
Don/acc character 0.945
SiteScore 0.611
D Score 0.432

Compound LLL
Residue . / 1662
Chain CM / CA
Non-redundant False
Interacting RNA chains BB/CA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound LLL
Residue . / 3112
Chain LQ / DB
Non-redundant False
Interacting RNA chains XB/DB
Volume 188.65 Å3
Hydrophobicity 0.076
Hydrophilicity 1.320
Buriedness 0.703
Don/acc character 1.033
SiteScore 0.685
D Score 0.523