HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5g

System information

Experimental technique X-ray
Experimental resolution 3.60
System mass 4668.79 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 4v5g
Reference Schmeing T. Martin, Voorhees Rebecca M., Kelley Ann C., Gao Yong-Gui, Murphy Frank V., Weir John R., Ramakrishnan V.. . The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA Science

Compound GDP
Residue . / 501
Chain AE / CZ
Non-redundant True
Interacting RNA chains RC/DA
Volume 312.47 Å3
Hydrophobicity 0.035
Hydrophilicity 1.383
Buriedness 0.703
Don/acc character 1.263
SiteScore 0.934
D Score 0.822

Compound PAR
Residue . / 1601
Chain OD / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 370.78 Å3
Hydrophobicity 0.102
Hydrophilicity 0.962
Buriedness 0.671
Don/acc character 2.537
SiteScore 1.113
D Score 0.986

Compound PAR
Residue . / 1601
Chain WD / CA
Non-redundant True
Interacting RNA chains HB/CA
Volume 717.90 Å3
Hydrophobicity 0.063
Hydrophilicity 1.077
Buriedness 0.684
Don/acc character 2.122
SiteScore 1.141
D Score 0.999