HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v8a

System information

Experimental technique X-ray
Experimental resolution 3.20
System mass 4328.29 kDa
Deposition year 2011
Molecule type RNA/Protein
# RNA entities 3
Organism Thermus
RCSB PDB Entry 4v8a
Reference Bulkley David, Johnson Francis, Steitz Thomas A.. . The Antibiotic Thermorubin Inhibits Protein Synthesis by Binding to Inter-Subunit Bridge B2a of the Ribosome Journal of Molecular Biology

Compound T8B
Residue . / 3001
Chain YC / AA
Non-redundant True
Interacting RNA chains A/AA, DC/DA
Volume 285.72 Å3
Hydrophobicity 0.545
Hydrophilicity 0.899
Buriedness 0.646
Don/acc character 0.949
SiteScore 0.993
D Score 1.034

Compound T8B
Residue . / 3001
Chain BD / BA
Non-redundant False
Interacting RNA chains EA/BA, IB/CA
Volume 284.00 Å3
Hydrophobicity 0.573
Hydrophilicity 0.874
Buriedness 0.617
Don/acc character 0.835
SiteScore 0.978
D Score 1.025