Complex 4v8j
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.90 |
| System mass | 4570.46 kDa |
| Deposition year | 2011 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 4v8j |
| Reference | Fagan Crystal E., Dunkle Jack A., Maehigashi Tatsuya, Dang Mai N., Devaraj Aishwarya, Miles Stacey J., Qin Daoming, Fredrick Kurt, Dunham Christine M.. . Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.49 |
| Compound | PAR |
| Residue | . / 1694 |
| Chain | ZG / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 47.33 Å3 |
| Hydrophobicity | 0.109 |
| Hydrophilicity | 0.889 |
| Buriedness | 0.546 |
| Don/acc character | 2.879 |
| SiteScore | 0.746 |
| D Score | 0.553 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1695 |
| Chain | IV / CA |
| Non-redundant | True |
| Interacting RNA chains | FB/CA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | FB/CA: rRNA |
| RNA family global | rRNA |
| Volume | 285.38 Å3 |
| Hydrophobicity | 0.180 |
| Hydrophilicity | 0.993 |
| Buriedness | 0.687 |
| Don/acc character | 3.078 |
| SiteScore | 1.028 |
| D Score | 0.870 |
| Kd | — |