Complex 4qlm
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.72 |
| System mass | 42.07 kDa |
| Deposition year | 2014 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Caldanaerobacter |
| RCSB PDB Entry | 4qlm |
| Reference | Ren Aiming, Patel Dinshaw J. . c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry–related pockets Nature Chemical Biology |
| Equivalence Class |
NR_all_53735.3
BGSU version: 4.49 |
| Compound | 2BA |
| Residue | . / 203 |
| Chain | D / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 499.07 Å3 |
| Hydrophobicity | 0.429 |
| Hydrophilicity | 1.035 |
| Buriedness | 0.746 |
| Don/acc character | 1.659 |
| SiteScore | 1.184 |
| D Score | 1.050 |
| Kd | 66nM |
| Compound | 2BA |
| Residue | . / 204 |
| Chain | E / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 340.26 Å3 |
| Hydrophobicity | 0.373 |
| Hydrophilicity | 0.989 |
| Buriedness | 0.715 |
| Don/acc character | 1.105 |
| SiteScore | 1.122 |
| D Score | 0.983 |
| Kd | 66nM |