Complex 4qk9
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.05 |
| System mass | 41.96 kDa |
| Deposition year | 2014 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Thermovirga |
| RCSB PDB Entry | 4qk9 |
| Reference | Gao Ang, Serganov Alexander. . Structural insights into recognition of c-di-AMP by the ydaO riboswitch Nature Chemical Biology |
| Equivalence Class |
NR_all_91474.1
BGSU version: 4.49 |
| Compound | 2BA |
| Residue | . / 201 |
| Chain | B / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 389.99 Å3 |
| Hydrophobicity | 0.300 |
| Hydrophilicity | 1.026 |
| Buriedness | 0.735 |
| Don/acc character | 1.318 |
| SiteScore | 1.178 |
| D Score | 1.047 |
| Kd | 300nM |
| Compound | 2BA |
| Residue | . / 202 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 368.38 Å3 |
| Hydrophobicity | 0.202 |
| Hydrophilicity | 0.987 |
| Buriedness | 0.701 |
| Don/acc character | 1.142 |
| SiteScore | 1.162 |
| D Score | 1.039 |
| Kd | 300nM |