Complex 4v51
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 4494.24 kDa |
| Deposition year | 2006 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 4v51 |
| Reference | Selmer Maria, Dunham Christine M., Murphy Frank V., Weixlbaumer Albert, Petry Sabine, Kelley Ann C., Weir John R., Ramakrishnan V.. 2006. Structure of the 70 S Ribosome Complexed with mRNA and tRNA Science |
| Equivalence Class |
NR_all_65795.87
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1816 |
| Chain | PL / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/AA: rRNA |
| RNA family global | rRNA |
| Volume | 744.65 Å3 |
| Hydrophobicity | 0.100 |
| Hydrophilicity | 1.641 |
| Buriedness | 0.677 |
| Don/acc character | 1.022 |
| SiteScore | 1.136 |
| D Score | 0.811 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1790 |
| Chain | FNA / CA |
| Non-redundant | True |
| Interacting RNA chains | EB/CA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | EB/CA: rRNA |
| RNA family global | rRNA |
| Volume | 248.68 Å3 |
| Hydrophobicity | 0.071 |
| Hydrophilicity | 1.482 |
| Buriedness | 0.704 |
| Don/acc character | 1.166 |
| SiteScore | 1.120 |
| D Score | 0.836 |
| Kd | — |