HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4u56

System information

Experimental technique X-ray
Experimental resolution 3.45
System mass 6631.55 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Saccharomyces
RCSB PDB Entry 4u56
Reference Garreau de Loubresse Nicolas, Prokhorova Irina, Holtkamp Wolf, Rodnina Marina V., Yusupova Gulnara, Yusupov Marat. . Structural basis for the inhibition of the eukaryotic ribosome Nature
Equivalence Class NR_all_90506.85
BGSU version: 4.48

Compound BLS
Residue . / 4211
Chain WVA / 1
Non-redundant True
Interacting RNA chains JA/1
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains JA/1: rRNA
RNA family global rRNA
Volume 476.43 Å3
Hydrophobicity 0.214
Hydrophilicity 1.280
Buriedness 0.694
Don/acc character 1.208
SiteScore 1.147
D Score 0.939
Kd

Compound BLS
Residue . / 4248
Chain LUC / 5
Non-redundant True
Interacting RNA chains KD/5
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains KD/5: rRNA
RNA family global rRNA
Volume 556.35 Å3
Hydrophobicity 0.242
Hydrophilicity 1.262
Buriedness 0.693
Don/acc character 1.178
SiteScore 1.146
D Score 0.944
Kd