HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4u52

System information

Experimental technique X-ray
Experimental resolution 3.00
System mass 6631.00 kDa
Deposition year 2014
Molecule type RNA/Protein
# RNA entities 1
Organism Saccharomyces
RCSB PDB Entry 4u52
Reference Garreau de Loubresse Nicolas, Prokhorova Irina, Holtkamp Wolf, Rodnina Marina V., Yusupova Gulnara, Yusupov Marat. . Structural basis for the inhibition of the eukaryotic ribosome Nature
Equivalence Class NR_all_90506.85
BGSU version: 4.49

Compound 3J2
Residue . / 4209
Chain UVA / 1
Non-redundant True
Interacting RNA chains JA/1
RNA environment detailled ion
RNA environment global RNA
RNA family chains JA/1: rRNA
RNA family global rRNA
Volume 628.38 Å3
Hydrophobicity 0.464
Hydrophilicity 1.334
Buriedness 0.786
Don/acc character 1.036
SiteScore 1.209
D Score 0.977
Kd

Compound 3J2
Residue . / 4254
Chain VUC / 5
Non-redundant True
Interacting RNA chains KD/5
RNA environment detailled ion
RNA environment global RNA
RNA family chains KD/5: rRNA
RNA family global rRNA
Volume 686.00 Å3
Hydrophobicity 0.488
Hydrophilicity 1.390
Buriedness 0.767
Don/acc character 0.717
SiteScore 1.196
D Score 0.947
Kd